X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fgui%2FStructureChooserTest.java;h=9529d9f5c792513225bb07e067859989b58f2447;hb=a848ed8eb380e5f9d915b0d7a062feec4f9d3dad;hp=3f7a3f8ee84732183d1d771891864b4e1366e791;hpb=43699f9bc6ba2f390d3652f69b6db8975ff727c0;p=jalview.git diff --git a/test/jalview/gui/StructureChooserTest.java b/test/jalview/gui/StructureChooserTest.java index 3f7a3f8..9529d9f 100644 --- a/test/jalview/gui/StructureChooserTest.java +++ b/test/jalview/gui/StructureChooserTest.java @@ -83,24 +83,21 @@ public class StructureChooserTest seq = null; } + @SuppressWarnings("deprecation") @Test(groups = { "Functional" }) public void buildQueryTest() { + System.out.println("seq >>>> " + seq); String query = StructureChooser.buildQuery(seq); assertEquals("pdb_id:1tim", query); - System.out.println("seq >>>> " + seq); seq.getAllPDBEntries().clear(); query = StructureChooser.buildQuery(seq); assertEquals( "text:XYZ_1 OR text:XYZ_2 OR text:XYZ_3 OR text:XYZ_4 OR text:4kqy", query); - try { - seq.setDBRefs(null); - } catch (InvalidArgumentException e) { - // TODO Auto-generated catch block - e.printStackTrace(); - } + seq.setDBRefs(null); query = StructureChooser.buildQuery(seq); + System.out.println(query); assertEquals("text:4kqy", query); DBRefEntry uniprotDBRef = new DBRefEntry(); @@ -119,6 +116,9 @@ public class StructureChooserTest dbRef.setAccessionId("XYZ_" + x); seq.addDBRef(dbRef); } + System.out.println(""); + System.out.println(seq.getDBRefs()); + System.out.println(query); query = StructureChooser.buildQuery(seq); assertEquals( "uniprot_accession:P12345 OR uniprot_id:P12345 OR pdb_id:1xyz",