X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fhmmer%2FHMMERTest.java;h=c92213305699eb4dfcc6986fab555832f8df05c1;hb=6dda78dd65a8f6f25356d9fe95078afbba4eadcd;hp=7707dca7a6a86f3e8b9875a94269d6d349e3ce6b;hpb=bd4ab013e64863bbbffa93c58953051e11cfb236;p=jalview.git

diff --git a/test/jalview/hmmer/HMMERTest.java b/test/jalview/hmmer/HMMERTest.java
index 7707dca..c922133 100644
--- a/test/jalview/hmmer/HMMERTest.java
+++ b/test/jalview/hmmer/HMMERTest.java
@@ -2,6 +2,7 @@ package jalview.hmmer;
 
 import static org.testng.Assert.assertEquals;
 import static org.testng.Assert.assertNotEquals;
+import static org.testng.Assert.assertNotNull;
 import static org.testng.Assert.fail;
 
 import jalview.bin.Jalview;
@@ -99,12 +100,11 @@ public class HMMERTest {
       fail();
     }
 
-    AlignFrame frame = Desktop.getAlignFrames()[0];
-    AlignmentI al = frame.getViewport().getAlignment();
+    AlignFrame fr = Desktop.getAlignFrames()[0];
+    AlignmentI al = fr.getViewport().getAlignment();
     assertNotEquals(al, null);
-    List<SequenceI> hmmSeqs = al.getHMMConsensusSequences(false);
-    assertNotEquals(hmmSeqs, null);
-
+    List<SequenceI> hmmSeqs = al.getHMMConsensusSequences();
+    assertNotNull(hmmSeqs);
   }
 }