X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fio%2FAnnotationFileIOTest.java;h=0e066c28fc03cb97ce1875394bf24ae4c14d65a7;hb=d53fdb7d3610e7f8287f3c76592dd3c2b2aa03f3;hp=3d4e841d10d11306a1df74df62b12906bbbe854c;hpb=18a869338d12b9069496e3e07b994df01ffe78f4;p=jalview.git

diff --git a/test/jalview/io/AnnotationFileIOTest.java b/test/jalview/io/AnnotationFileIOTest.java
index 3d4e841..0e066c2 100644
--- a/test/jalview/io/AnnotationFileIOTest.java
+++ b/test/jalview/io/AnnotationFileIOTest.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -115,13 +115,12 @@ public class AnnotationFileIOTest
               new AnnotationFile().readAnnotationFile(al, cs, af,
                       FormatAdapter.FILE));
 
-      ViewDef[] v = new ViewDef[1];
       AnnotationFile aff = new AnnotationFile();
-      v[0] = aff.new ViewDef(null, al.getHiddenSequences(), cs,
+      ViewDef v = aff.new ViewDef(null, al.getHiddenSequences(), cs,
               new Hashtable());
       String anfileout = new AnnotationFile().printAnnotations(
               al.getAlignmentAnnotation(), al.getGroups(),
-              al.getProperties(), v);
+              al.getProperties(), null, al, v);
       assertTrue(
               "Test "
                       + testname
@@ -145,7 +144,7 @@ public class AnnotationFileIOTest
                       FormatAdapter.PASTE));
 
       // test for consistency in io
-      StockholmFileTest.testAlignmentEquivalence(al, al_new);
+      StockholmFileTest.testAlignmentEquivalence(al, al_new, false);
       return;
     } catch (Exception e)
     {