X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fio%2FAnnotationFileIOTest.java;h=0e066c28fc03cb97ce1875394bf24ae4c14d65a7;hb=fe9cea784bed23e4fe5507714bf945b4ca67c077;hp=09624520c7ffbfa810365006bfa7189800ff54c4;hpb=d059fd7639c70b5f11c6a36eae2336dc91a21263;p=jalview.git

diff --git a/test/jalview/io/AnnotationFileIOTest.java b/test/jalview/io/AnnotationFileIOTest.java
index 0962452..0e066c2 100644
--- a/test/jalview/io/AnnotationFileIOTest.java
+++ b/test/jalview/io/AnnotationFileIOTest.java
@@ -144,7 +144,7 @@ public class AnnotationFileIOTest
                       FormatAdapter.PASTE));
 
       // test for consistency in io
-      StockholmFileTest.testAlignmentEquivalence(al, al_new);
+      StockholmFileTest.testAlignmentEquivalence(al, al_new, false);
       return;
     } catch (Exception e)
     {