X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fio%2FAnnotationFileIOTest.java;h=c9b5f4a1f3ea2eca45b57e24c2778a7ebfca9d01;hb=489580c3b488b2989892ce0df98762eb9654bfbd;hp=d457fdc3a56add5ce509a308898b77c46e689d24;hpb=838e4f91d4a53dd315640dbc9ff6ef7a815ee576;p=jalview.git diff --git a/test/jalview/io/AnnotationFileIOTest.java b/test/jalview/io/AnnotationFileIOTest.java index d457fdc..c9b5f4a 100644 --- a/test/jalview/io/AnnotationFileIOTest.java +++ b/test/jalview/io/AnnotationFileIOTest.java @@ -1,6 +1,6 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1) - * Copyright (C) 2015 The Jalview Authors + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of Jalview. * @@ -70,13 +70,12 @@ public class AnnotationFileIOTest FormatAdapter rf = new FormatAdapter(); AlignmentI al = rf.readFile(ff, AppletFormatAdapter.FILE, - new IdentifyFile().Identify(ff, AppletFormatAdapter.FILE)); + new IdentifyFile().identify(ff, AppletFormatAdapter.FILE)); // make sure dataset is initialised ? not sure about this for (int i = 0; i < al.getSequencesArray().length; ++i) { - al.getSequenceAt(i).setDatasetSequence( - al.getSequenceAt(i).createDatasetSequence()); + al.getSequenceAt(i).createDatasetSequence(); } assertNotNull("Couldn't read supplied alignment data.", al); return al;