X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fio%2FGenBankFileTest.java;h=83d630f73529fc634d34a7e6a6180969fe6a7b59;hb=d654b1f014790b7ae25e6eec631847170a930987;hp=89f0d0ebc61fc71a3983684a01392a26623db030;hpb=41e20dff103d6d1995b2ed3b6d6479f359025531;p=jalview.git

diff --git a/test/jalview/io/GenBankFileTest.java b/test/jalview/io/GenBankFileTest.java
index 89f0d0e..83d630f 100644
--- a/test/jalview/io/GenBankFileTest.java
+++ b/test/jalview/io/GenBankFileTest.java
@@ -13,7 +13,7 @@ import java.util.Set;
 import org.testng.annotations.BeforeClass;
 import org.testng.annotations.Test;
 
-import jalview.bin.Cache;
+import jalview.bin.Console;
 import jalview.datamodel.DBRefEntry;
 import jalview.datamodel.Mapping;
 import jalview.datamodel.SequenceFeature;
@@ -26,7 +26,7 @@ public class GenBankFileTest
   @BeforeClass(alwaysRun = true)
   public void setUp()
   {
-    Cache.initLogger();
+    Console.initLogger();
   }
 
   /**
@@ -42,7 +42,7 @@ public class GenBankFileTest
     File dataFile = new File("test/jalview/io/J03321.gb");
     FileParse fp = new FileParse(dataFile.getAbsolutePath(),
             DataSourceType.FILE);
-    FlatFile parser = new GenBankFile(fp, "GenBankTest");
+    EMBLLikeFlatFile parser = new GenBankFile(fp, "GenBankTest");
     List<SequenceI> seqs = parser.getSeqs();
 
     assertEquals(seqs.size(), 1);
@@ -193,7 +193,7 @@ public class GenBankFileTest
     assertTrue(seqString.endsWith("FKQKS"));
     map = mapping.getMap();
     assertEquals(map.getFromLowest(), 6045);
-    assertEquals(map.getFromHighest(), 6788);
+    assertEquals(map.getFromHighest(), 6785); // excludes stop at 6788
     assertEquals(map.getToLowest(), 1);
     assertEquals(map.getToHighest(), 247);
     assertEquals(map.getFromRatio(), 3);