X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fio%2FJalview2xmlBase.java;fp=test%2Fjalview%2Fio%2FJalview2xmlBase.java;h=bfd5ca48c57208050e2c93d65a764729a5989c41;hb=309af01a4a460b17ef6b924a20057b372d8fbeac;hp=0000000000000000000000000000000000000000;hpb=86f6122c4537264ac1a6203aaf589f08d725e648;p=jalview.git

diff --git a/test/jalview/io/Jalview2xmlBase.java b/test/jalview/io/Jalview2xmlBase.java
new file mode 100644
index 0000000..bfd5ca4
--- /dev/null
+++ b/test/jalview/io/Jalview2xmlBase.java
@@ -0,0 +1,58 @@
+package jalview.io;
+
+import jalview.bin.Cache;
+import jalview.datamodel.AlignmentAnnotation;
+import jalview.datamodel.SequenceI;
+
+import java.time.Instant;
+import java.util.Date;
+
+import org.testng.annotations.AfterClass;
+import org.testng.annotations.BeforeClass;
+
+public class Jalview2xmlBase
+{
+
+  /**
+   * @throws java.lang.Exception
+   */
+  @BeforeClass(alwaysRun = true)
+  public static void setUpBeforeClass() throws Exception
+  {
+    jalview.bin.Jalview.main(new String[] { "-props",
+        "test/jalview/io/testProps.jvprops" });
+    jalview.bin.Cache.setProperty(
+            "JALVIEW_NEWS_RSS_LASTMODIFIED",
+            Cache.date_format.format(Date.from(Instant.now().plusSeconds(
+                    3600))));
+  }
+
+  /**
+   * @throws java.lang.Exception
+   */
+  @AfterClass(alwaysRun = true)
+  public static void tearDownAfterClass() throws Exception
+  {
+    jalview.gui.Desktop.instance.closeAll_actionPerformed(null);
+  }
+
+  public int countDsAnn(jalview.viewmodel.AlignmentViewport avp)
+  {
+    int numdsann = 0;
+    for (SequenceI sq : avp.getAlignment().getDataset().getSequences())
+    {
+      if (sq.getAnnotation() != null)
+      {
+        for (AlignmentAnnotation dssa : sq.getAnnotation())
+        {
+          if (dssa.isValidStruc())
+          {
+            numdsann++;
+          }
+        }
+      }
+    }
+    return numdsann;
+  }
+
+}