X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fio%2FNewickFileTests.java;h=466f218be7cbf9ca165d9c915226706b2e6bfd14;hb=4bc5c1c97bd08007b2ac9ccfd9b3cb29eac10193;hp=02c5ccd210a83ed1ced37bbe72062fec9317645b;hpb=fe68da05540c32386ec63bd3beeadf8b9d624a16;p=jalview.git diff --git a/test/jalview/io/NewickFileTests.java b/test/jalview/io/NewickFileTests.java index 02c5ccd..466f218 100644 --- a/test/jalview/io/NewickFileTests.java +++ b/test/jalview/io/NewickFileTests.java @@ -106,7 +106,7 @@ public class NewickFileTests AssertJUnit.assertTrue( stage + "Invalid Tree '" + nf.getWarningMessage() + "'", nf.isValid()); - SequenceNode tree = nf.getTree(); + BinaryNode tree = nf.getTree(); AssertJUnit.assertTrue(stage + "Null Tree", tree != null); stage = "Creating newick file from testTree " + treename; String gentree = new NewickFile(tree).print(nf.HasBootstrap(), @@ -124,7 +124,7 @@ public class NewickFileTests AssertJUnit.assertTrue(stage + "Null Tree", tree_regen != null); stage = "Compare original and generated tree" + treename; - Vector oseqs, nseqs; + Vector oseqs, nseqs; oseqs = new TreeModel(new SequenceI[0], null, nf) .findLeaves(nf.getTree()); AssertJUnit.assertTrue(stage + "No nodes in original tree.",