X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fio%2FNewickFileTests.java;h=a92f5fb0868356408a6e0859ae2b6ff3a8924f9d;hb=d87b55e45cc1e6a5b7df3865ded1b87a0e3dc7ff;hp=4a3279005f83842c7f82c5a6cbb1e3462f4cfaf6;hpb=be27d7b3cadbfb5c488066034c48b1735799b429;p=jalview.git diff --git a/test/jalview/io/NewickFileTests.java b/test/jalview/io/NewickFileTests.java index 4a32790..a92f5fb 100644 --- a/test/jalview/io/NewickFileTests.java +++ b/test/jalview/io/NewickFileTests.java @@ -125,7 +125,8 @@ public class NewickFileTests stage = "Compare original and generated tree" + treename; Vector oseqs, nseqs; - oseqs = new TreeModel(new SequenceI[0], nf).findLeaves(nf.getTree()); + oseqs = new TreeModel(new SequenceI[0], null, nf).findLeaves(nf + .getTree()); AssertJUnit.assertTrue(stage + "No nodes in original tree.", oseqs.size() > 0); SequenceI[] olsqs = new SequenceI[oseqs.size()]; @@ -133,7 +134,8 @@ public class NewickFileTests { olsqs[i] = (SequenceI) oseqs.get(i).element(); } - nseqs = new TreeModel(new SequenceI[0], nf_regen).findLeaves(nf_regen + nseqs = new TreeModel(new SequenceI[0], null, nf_regen) + .findLeaves(nf_regen .getTree()); AssertJUnit.assertTrue(stage + "No nodes in regerated tree.", nseqs.size() > 0);