X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fio%2FPfamFormatInputTest.java;fp=test%2Fjalview%2Fio%2FPfamFormatInputTest.java;h=c91f8d7933033b31be72b08258a036f4215c7bdf;hb=57738a1f3c19b1c3a00bd3ac5108f8cd0af32f99;hp=52a13f662e19496fadd440480af8f26fec68940c;hpb=e7338a61f3ce96dadf44ac80b2b32cc5ba4b94c8;p=jalview.git diff --git a/test/jalview/io/PfamFormatInputTest.java b/test/jalview/io/PfamFormatInputTest.java index 52a13f6..c91f8d7 100644 --- a/test/jalview/io/PfamFormatInputTest.java +++ b/test/jalview/io/PfamFormatInputTest.java @@ -42,8 +42,8 @@ public class PfamFormatInputTest @Test(groups = "Functional") public void testPfamFormatNoLimits() throws IOException { - AlignmentI al = new AppletFormatAdapter().readFile("ASEQ" - + '\t' + "...--FFAFAFF--", DataSourceType.PASTE, + AlignmentI al = new AppletFormatAdapter().readFile( + "ASEQ" + '\t' + "...--FFAFAFF--", DataSourceType.PASTE, FileFormat.Pfam); Assert.assertEquals(1, al.getHeight(), "Wrong number of sequences"); Assert.assertTrue(al.hasValidSequence(), @@ -53,8 +53,9 @@ public class PfamFormatInputTest @Test(groups = "Functional") public void testPfamFormatValidLimits() throws IOException { - AlignmentI al = new AppletFormatAdapter().readFile("ASEQ/15-25" + '\t' - + "...--FFAFAFF--", DataSourceType.PASTE, FileFormat.Pfam); + AlignmentI al = new AppletFormatAdapter().readFile( + "ASEQ/15-25" + '\t' + "...--FFAFAFF--", DataSourceType.PASTE, + FileFormat.Pfam); Assert.assertEquals(1, al.getHeight(), "Wrong number of sequences"); Assert.assertTrue(al.hasValidSequence(), "Didn't extract limits from PFAM ID");