X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fio%2FPhylipFileTests.java;h=d85335027c59fcd5fdde7bc6f3b3724a88d5ad4a;hb=4049384e3d77c203e90d15017abaa5b60203fc58;hp=e0f1f684b2c270a702a832d020dfab33ee84e1a4;hpb=ee198b3ca3687f18a2ee186f4e7c7330f4ea30f0;p=jalview.git

diff --git a/test/jalview/io/PhylipFileTests.java b/test/jalview/io/PhylipFileTests.java
index e0f1f68..d853350 100644
--- a/test/jalview/io/PhylipFileTests.java
+++ b/test/jalview/io/PhylipFileTests.java
@@ -25,11 +25,13 @@ import static org.testng.AssertJUnit.assertTrue;
 
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.SequenceI;
+import jalview.gui.JvOptionPane;
 
 import java.io.IOException;
 import java.util.HashMap;
 import java.util.Map;
 
+import org.testng.annotations.BeforeClass;
 import org.testng.annotations.Test;
 
 /**
@@ -45,6 +47,13 @@ import org.testng.annotations.Test;
 public class PhylipFileTests
 {
 
+  @BeforeClass(alwaysRun = true)
+  public void setUpJvOptionPane()
+  {
+    JvOptionPane.setInteractiveMode(false);
+    JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
+  }
+
   // interleaved file from
   // http://www.molecularevolution.org/molevolfiles/fileformats/dna.phy.dat
   // sequential file is the interleave file converted into sequential format
@@ -181,7 +190,8 @@ public class PhylipFileTests
             DataSourceType.PASTE, FileFormat.Phylip);
     assertNotNull("Couldn't parse reimported alignment data.", al_input);
 
-    StockholmFileTest.testAlignmentEquivalence(al, al_input, false);
+    StockholmFileTest.testAlignmentEquivalence(al, al_input, false, false,
+            false);
 
   }
 }