X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fio%2FRNAMLfileTest.java;h=d2b6f657224759ef1f8f8b314767be9ee49cd336;hb=a7169b1c72607f3c9357195b4999869650a2a891;hp=d16fb5f567f102c411da69f248b1b7d6f1318c1e;hpb=483e7163b1fb8d4bcb9393014816c944befce328;p=jalview.git

diff --git a/test/jalview/io/RNAMLfileTest.java b/test/jalview/io/RNAMLfileTest.java
index d16fb5f..d2b6f65 100644
--- a/test/jalview/io/RNAMLfileTest.java
+++ b/test/jalview/io/RNAMLfileTest.java
@@ -20,14 +20,22 @@
  */
 package jalview.io;
 
+import jalview.datamodel.SequenceI;
 import jalview.gui.JvOptionPane;
 
+import static org.testng.Assert.assertEquals;
+import static org.testng.Assert.assertNotNull;
+
 import java.io.File;
+import java.io.IOException;
 
 import org.testng.annotations.AfterClass;
 import org.testng.annotations.BeforeClass;
 import org.testng.annotations.Test;
 
+import fr.orsay.lri.varna.utils.RNAMLParser;
+import groovy.lang.Sequence;
+
 public class RNAMLfileTest
 {
 
@@ -51,10 +59,20 @@ public class RNAMLfileTest
   @Test(groups = { "Functional" })
   public void testRnamlToStockholmIO()
   {
-    StockholmFileTest.testFileIOwithFormat(new File(
-            "examples/testdata/rna-alignment.xml"), FileFormat.Stockholm,
-            -1, -1);
+    StockholmFileTest.testFileIOwithFormat(
+            new File("examples/testdata/rna-alignment.xml"),
+            FileFormat.Stockholm, -1, -1, true, true, true);
 
   }
 
+  @Test(groups= {"Functional"})
+  public void testRnamlSeqImport() throws IOException
+  {
+    RnamlFile parser = new RnamlFile("examples/testdata/7WKP-rna1.xml", DataSourceType.FILE);
+    SequenceI[] seqs  = parser.getSeqsAsArray();
+    assertNotNull(seqs);
+    assertEquals(seqs.length,1);
+    assertEquals(seqs[0].getEnd()-seqs[0].getStart()+1,seqs[0].getSequence().length);
+  }
+
 }