X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fio%2FSequenceAnnotationReportTest.java;fp=test%2Fjalview%2Fio%2FSequenceAnnotationReportTest.java;h=f3a75868ef43c42d215ef499383a69c07a9a2976;hb=64741412a510f134a0e08fc87d1e84d938022dbb;hp=772ed2bb7570050645da2caaa3a1eaf236430d0c;hpb=31f53b929912da9b5e15187af2d9557393655b05;p=jalview.git
diff --git a/test/jalview/io/SequenceAnnotationReportTest.java b/test/jalview/io/SequenceAnnotationReportTest.java
index 772ed2b..f3a7586 100644
--- a/test/jalview/io/SequenceAnnotationReportTest.java
+++ b/test/jalview/io/SequenceAnnotationReportTest.java
@@ -69,15 +69,15 @@ public class SequenceAnnotationReportTest
sar.appendFeature(sb, 2, null, sf, null, 0);
assertEquals("123456", sb.toString());
- // residuePos == 1 matches start of feature, text appended (but no
)
+ // residuePos == 1 matches start of feature, text appended (but no
)
// feature score is not included
sar.appendFeature(sb, 1, null, sf, null, 0);
assertEquals("123456disulfide bond 1:3", sb.toString());
// residuePos == 3 matches end of feature, text appended
- //
is prefixed once sb.length() > 6
+ //
is prefixed once sb.length() > 6
sar.appendFeature(sb, 3, null, sf, null, 0);
- assertEquals("123456disulfide bond 1:3
disulfide bond 1:3",
+ assertEquals("123456disulfide bond 1:3
disulfide bond 1:3",
sb.toString());
}
@@ -147,8 +147,8 @@ public class SequenceAnnotationReportTest
*/
minmax.put("METAL", new float[][] { { 0f, 1f }, null });
sar.appendFeature(sb, 1, fr, sf, null, 0);
- //
is appended to a buffer > 6 in length
- assertEquals("METAL 1 3; Fe2-S
METAL 1 3; Fe2-S Score=1.3",
+ //
is appended to a buffer > 6 in length
+ assertEquals("METAL 1 3; Fe2-S
METAL 1 3; Fe2-S Score=1.3",
sb.toString());
/*
@@ -299,7 +299,7 @@ public class SequenceAnnotationReportTest
null));
sb.setLength(0);
sar.createSequenceAnnotationReport(sb, seq, true, true, null);
- String expected = "SeqDesc
Type1 ; Nonpos Score=1.0";
+ String expected = "SeqDesc
Type1 ; Nonpos Score=1.0";
assertEquals(expected, sb.toString());
/*
@@ -324,7 +324,7 @@ public class SequenceAnnotationReportTest
sb.setLength(0);
sar.createSequenceAnnotationReport(sb, seq, true, true, fr);
- expected = "SeqDesc
Metal ; Desc
Type1 ; Nonpos";
+ expected = "SeqDesc
Metal ; Desc
Type1 ; Nonpos";
assertEquals(expected, sb.toString());
/*
@@ -349,7 +349,7 @@ public class SequenceAnnotationReportTest
seq.addSequenceFeature(sf2);
sb.setLength(0);
sar.createSequenceAnnotationReport(sb, seq, true, true, fr);
- expected = "SeqDesc
Metal ; Desc
Type1 ; Nonpos
Variant ; Havana";
+ expected = "SeqDesc
Metal ; Desc
Type1 ; Nonpos
Variant ; Havana";
assertEquals(expected, sb.toString());
/*
@@ -370,13 +370,13 @@ public class SequenceAnnotationReportTest
fc.setAttributeName("clinical_significance");
fr.setColour("Variant", fc);
sar.createSequenceAnnotationReport(sb, seq, true, true, fr);
- expected = "SeqDesc
UNIPROT P30419
PDB 3iu1
Metal ; Desc
"
- + "Type1 ; Nonpos
Variant ; Havana; clinical_significance=benign";
+ expected = "SeqDesc
UNIPROT P30419
PDB 3iu1
Metal ; Desc
"
+ + "Type1 ; Nonpos
Variant ; Havana; clinical_significance=benign";
assertEquals(expected, sb.toString());
// with showNonPositionalFeatures = false
sb.setLength(0);
sar.createSequenceAnnotationReport(sb, seq, true, false, fr);
- expected = "SeqDesc
UNIPROT P30419
PDB 3iu1";
+ expected = "SeqDesc
UNIPROT P30419
PDB 3iu1";
assertEquals(expected, sb.toString());
/*
@@ -386,7 +386,7 @@ public class SequenceAnnotationReportTest
sf2.setDescription(
"This is a very long description which should be truncated");
sar.createSequenceAnnotationReport(sb, seq, false, true, fr);
- expected = "SeqDesc
Metal ; Desc
Type1 ; Nonpos
Variant ; This is a very long description which sh...; clinical_significance=benign";
+ expected = "SeqDesc
Metal ; Desc
Type1 ; Nonpos
Variant ; This is a very long description which sh...; clinical_significance=benign";
assertEquals(expected, sb.toString());
// see other tests for treatment of status and html
@@ -421,10 +421,10 @@ public class SequenceAnnotationReportTest
String report = sb.toString();
assertTrue(report
.startsWith(
- "
UNIPROT P30410, P30411, P30412, P30413,...
PDB0 3iu1"));
+ "
UNIPROT P30410, P30411, P30412, P30413,...
PDB0 3iu1"));
assertTrue(report
.endsWith(
- "
PDB7 3iu1
PDB8,...
(Output Sequence Details to list all database references)"));
+ "
PDB7 3iu1
PDB8,...
(Output Sequence Details to list all database references)"));
}
/**