X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fio%2FSequenceAnnotationReportTest.java;h=07ae0ab442f7ef4702a3789bccda926ac023e4c8;hb=528c0f1815bc67b54618ad5b16c2162946974caf;hp=f5515718539f9c7b2455d4e0a474a87187f9c069;hpb=2cef2c13e720e889304333e70f893a23d1a98f42;p=jalview.git diff --git a/test/jalview/io/SequenceAnnotationReportTest.java b/test/jalview/io/SequenceAnnotationReportTest.java index f551571..07ae0ab 100644 --- a/test/jalview/io/SequenceAnnotationReportTest.java +++ b/test/jalview/io/SequenceAnnotationReportTest.java @@ -44,7 +44,7 @@ public class SequenceAnnotationReportTest SequenceFeature sf = new SequenceFeature("METAL", "Fe2-S", 1, 3, Float.NaN, "group"); sf.setStatus("Confirmed"); - + sar.appendFeature(sb, 1, null, sf); assertEquals("METAL 1 3; Fe2-S; (Confirmed)", sb.toString()); } @@ -89,7 +89,7 @@ public class SequenceAnnotationReportTest StringBuffer sb = new StringBuffer(); SequenceFeature sf = new SequenceFeature("METAL", "Fe2-S", 1, 3, Float.NaN, "group"); - + sar.appendFeature(sb, 1, null, sf); assertEquals("METAL 1 3; Fe2-S", sb.toString()); } @@ -102,7 +102,7 @@ public class SequenceAnnotationReportTest SequenceFeature sf = new SequenceFeature("METAL", "Fe2-S", 1, 3, Float.NaN, "group"); sf.setValue("clinical_significance", "Benign"); - + sar.appendFeature(sb, 1, null, sf); assertEquals("METAL 1 3; Fe2-S; Benign", sb.toString()); } @@ -131,7 +131,7 @@ public class SequenceAnnotationReportTest StringBuffer sb = new StringBuffer(); SequenceFeature sf = new SequenceFeature("METAL", "METAL", 1, 3, Float.NaN, "group"); - + // description is not included if it duplicates type: sar.appendFeature(sb, 1, null, sf); assertEquals("METAL 1 3", sb.toString()); @@ -151,11 +151,10 @@ public class SequenceAnnotationReportTest SequenceFeature sf = new SequenceFeature("METAL", "helloworld", 1, 3, Float.NaN, "group"); - + sar.appendFeature(sb, 1, null, sf); // !! strips off but not ?? - assertEquals("METAL 1 3; helloworld", - sb.toString()); + assertEquals("METAL 1 3; helloworld", sb.toString()); sb.setLength(0); sf.setDescription("
&kHD>6");