X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fio%2FStockholmFileTest.java;h=10f368a127babdd688c461558cc2ed7e99b942da;hb=4b7d3640209c4434d569c746672cf9eed4250ace;hp=6b2982dd274d4dcfe7b54bc5f08cdfd60928a3b5;hpb=195cc12bf3e78c312b9d7fbfb3aa86b4659684b7;p=jalview.git diff --git a/test/jalview/io/StockholmFileTest.java b/test/jalview/io/StockholmFileTest.java index 6b2982d..10f368a 100644 --- a/test/jalview/io/StockholmFileTest.java +++ b/test/jalview/io/StockholmFileTest.java @@ -136,27 +136,30 @@ public class StockholmFileTest "Couldn't find Uniprot DBRef on re-imported sequence."); } + @Test(groups = { "Functional" }) public void descriptionLineOutput() throws Exception { // quick test that sequence description is exported & reimported SequenceI sq = new Sequence("FER2_SPIOL", "AASSDDDFFF"); - String expected_descr="This is a description !@&^%@£@"; + String expected_descr = "This is a description !@&^%@£@"; sq.setDescription(expected_descr); AppletFormatAdapter af = new AppletFormatAdapter(); String toStockholm = af.formatSequences(FileFormat.Stockholm, new Alignment(new SequenceI[] { sq }), false); System.out.println(toStockholm); - + // bleh - java.util.Regex sucks - assertTrue(toStockholm.contains(expected_descr),"Couldn't locate expected description srting in generated Stockholm file."); - + assertTrue(toStockholm.contains(expected_descr), + "Couldn't locate expected description srting in generated Stockholm file."); + AlignmentI fromStockholm = af.readFile(toStockholm, DataSourceType.PASTE, FileFormat.Stockholm); SequenceI importedSeq = fromStockholm.getSequenceAt(0); - assertEquals( "Description did not get reimported.",expected_descr,importedSeq.getDescription()); + assertEquals("Description did not get reimported.", expected_descr, + importedSeq.getDescription()); } /**