X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fio%2FStockholmFileTest.java;h=bb822a06cabf7b70ab54d9d7540e4281d35e2dcf;hb=c794c5033adeee182b03a5ea92c0a7495a29661f;hp=5b74306015d349247413be8e3b206458eadeeafb;hpb=e1dbbc5edc07f65706eeb1dda9f4c9bcdee9d3a5;p=jalview.git

diff --git a/test/jalview/io/StockholmFileTest.java b/test/jalview/io/StockholmFileTest.java
index 5b74306..bb822a0 100644
--- a/test/jalview/io/StockholmFileTest.java
+++ b/test/jalview/io/StockholmFileTest.java
@@ -371,10 +371,11 @@ public class StockholmFileTest
                           || (seq_original[i].getSequenceFeatures() != null && seq_new[in]
                                   .getSequenceFeatures() != null));
           // compare sequence features
-          if (seq_original[i].getSequenceFeatures() != null
+          if (!ignoreFeatures
+                  && seq_original[i].getSequenceFeatures() != null
                   && seq_new[in].getSequenceFeatures() != null)
           {
-            System.out.println("There are feature!!!");
+            System.out.println("Checking feature equivalence.");
             sequenceFeatures_original = seq_original[i]
                     .getSequenceFeatures();
             sequenceFeatures_new = seq_new[in].getSequenceFeatures();