X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fio%2FStockholmFileTest.java;h=e88983793b55c68fd50b6b2d632f26eea1a4dcaa;hb=52288466dd1e71946a06fd1e6ea15fa8e652c693;hp=7ef5cc64dfc224308bceb1cf872347b6c477cfff;hpb=4d7f98a6dd54d9863ba449ec79dcd95d25ed863d;p=jalview.git

diff --git a/test/jalview/io/StockholmFileTest.java b/test/jalview/io/StockholmFileTest.java
index 7ef5cc6..e889837 100644
--- a/test/jalview/io/StockholmFileTest.java
+++ b/test/jalview/io/StockholmFileTest.java
@@ -43,13 +43,13 @@ public class StockholmFileTest
   static String PfamFile = "examples/PF00111_seed.stk",
           RfamFile = "examples/RF00031_folded.stk";
 
-  @Test(groups ={ "Functional" })
+  @Test(groups = { "Functional" })
   public void pfamFileIO() throws Exception
   {
     testFileIOwithFormat(new File(PfamFile), "STH", -1, 0);
   }
 
-  @Test(groups ={ "Functional" })
+  @Test(groups = { "Functional" })
   public void pfamFileDataExtraction() throws Exception
   {
     AppletFormatAdapter af = new AppletFormatAdapter();
@@ -68,7 +68,7 @@ public class StockholmFileTest
             numpdb > 0);
   }
 
-  @Test(groups ={ "Functional" })
+  @Test(groups = { "Functional" })
   public void rfamFileIO() throws Exception
   {
     testFileIOwithFormat(new File(RfamFile), "STH", 2, 1);
@@ -136,7 +136,7 @@ public class StockholmFileTest
       if (naliannot > -1)
       {
         assertEquals("Number of alignment annotations", naliannot,
-              numaliannot);
+                numaliannot);
       }
 
       assertTrue(
@@ -268,7 +268,7 @@ public class StockholmFileTest
                           + (ignoreFeatures ? " ignoring." : ""),
                   ignoreFeatures
                           || (seq_original[i].getSequenceFeatures() == null && seq_new[in]
-                          .getSequenceFeatures() == null)
+                                  .getSequenceFeatures() == null)
                           || (seq_original[i].getSequenceFeatures() != null && seq_new[in]
                                   .getSequenceFeatures() != null));
           // compare sequence features