X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fio%2FTCoffeeScoreFileTest.java;h=a46591c4eddd17909ad1f029674f3d42fb62ebd9;hb=ee198b3ca3687f18a2ee186f4e7c7330f4ea30f0;hp=181aabdd8e7bc951dbf63e899da41cb80c3895ab;hpb=0bec4854366c4bc4608ed0d7dc1506fc6afe2285;p=jalview.git

diff --git a/test/jalview/io/TCoffeeScoreFileTest.java b/test/jalview/io/TCoffeeScoreFileTest.java
index 181aabd..a46591c 100644
--- a/test/jalview/io/TCoffeeScoreFileTest.java
+++ b/test/jalview/io/TCoffeeScoreFileTest.java
@@ -45,7 +45,7 @@ public class TCoffeeScoreFileTest
   {
 
     TCoffeeScoreFile scoreFile = new TCoffeeScoreFile(SCORE_FILE.getPath(),
-            AppletFormatAdapter.FILE);
+            DataSourceType.FILE);
     AssertJUnit.assertTrue(scoreFile.getWarningMessage(),
             scoreFile.isValid());
 
@@ -73,7 +73,7 @@ public class TCoffeeScoreFileTest
     try
     {
       TCoffeeScoreFile result = new TCoffeeScoreFile(ALIGN_FILE.getPath(),
-              FormatAdapter.FILE);
+              DataSourceType.FILE);
       AssertJUnit.assertFalse(result.isValid());
     } catch (IOException x)
     {
@@ -86,7 +86,7 @@ public class TCoffeeScoreFileTest
   public void testHeightAndWidth() throws IOException
   {
     TCoffeeScoreFile result = new TCoffeeScoreFile(SCORE_FILE.getPath(),
-            FormatAdapter.FILE);
+            DataSourceType.FILE);
     AssertJUnit.assertTrue(result.isValid());
     AssertJUnit.assertEquals(8, result.getHeight());
     AssertJUnit.assertEquals(83, result.getWidth());
@@ -107,7 +107,7 @@ public class TCoffeeScoreFileTest
             + "1QCF   99999999999999999999999999974-------2---------24\n"
             + "cons   999999999999999999999999999851000110321100001134\n"
             + "\n" + "\n";
-    FileParse source = new FileParse(BLOCK, FormatAdapter.PASTE);
+    FileParse source = new FileParse(BLOCK, DataSourceType.PASTE);
     Block block = TCoffeeScoreFile.readBlock(source, 0);
 
     AssertJUnit.assertNotNull(block);
@@ -145,7 +145,7 @@ public class TCoffeeScoreFileTest
   {
 
     TCoffeeScoreFile parser = new TCoffeeScoreFile(SCORE_FILE.getPath(),
-            FormatAdapter.FILE);
+            DataSourceType.FILE);
 
     AssertJUnit
             .assertEquals(
@@ -190,7 +190,7 @@ public class TCoffeeScoreFileTest
   {
 
     TCoffeeScoreFile parser = new TCoffeeScoreFile(SCORE_FILE.getPath(),
-            FormatAdapter.FILE);
+            DataSourceType.FILE);
     AssertJUnit.assertTrue(parser.getWarningMessage(), parser.isValid());
     List<String> scores = parser.getScoresList();
     AssertJUnit
@@ -237,7 +237,7 @@ public class TCoffeeScoreFileTest
   {
 
     TCoffeeScoreFile parser = new TCoffeeScoreFile(SCORE_FILE.getPath(),
-            FormatAdapter.FILE);
+            DataSourceType.FILE);
     AssertJUnit.assertTrue(parser.getWarningMessage(), parser.isValid());
     byte[][] scores = parser.getScoresArray();
 
@@ -267,7 +267,7 @@ public class TCoffeeScoreFileTest
   public void testHeightAndWidthWithResidueNumbers() throws Exception
   {
     String file = "test/jalview/io/tcoffee.score_ascii_with_residue_numbers";
-    TCoffeeScoreFile result = new TCoffeeScoreFile(file, FormatAdapter.FILE);
+    TCoffeeScoreFile result = new TCoffeeScoreFile(file, DataSourceType.FILE);
     AssertJUnit.assertTrue(result.isValid());
     AssertJUnit.assertEquals(5, result.getHeight());
     AssertJUnit.assertEquals(84, result.getWidth());