X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fio%2Fgff%2FGff3HelperTest.java;h=5660666fdafdf057a613133b5a4051bad67716e1;hb=57738a1f3c19b1c3a00bd3ac5108f8cd0af32f99;hp=cd5a0d8853e8571d75a9992a241f39790e1aa20f;hpb=a5ad4f49249c216517d76303c731a8ca0d1f0c55;p=jalview.git

diff --git a/test/jalview/io/gff/Gff3HelperTest.java b/test/jalview/io/gff/Gff3HelperTest.java
index cd5a0d8..5660666 100644
--- a/test/jalview/io/gff/Gff3HelperTest.java
+++ b/test/jalview/io/gff/Gff3HelperTest.java
@@ -94,11 +94,11 @@ public class Gff3HelperTest
     assertSame(newseqs.get(0), mapping.getAaSeqs()[0]);
     assertEquals(1, mapping.getdnaToProt().length);
     assertEquals(1, mapping.getdnaToProt()[0].getFromRanges().size());
-    assertArrayEquals(new int[] { 12923, 13060 }, mapping.getdnaToProt()[0]
-            .getFromRanges().get(0));
+    assertArrayEquals(new int[] { 12923, 13060 },
+            mapping.getdnaToProt()[0].getFromRanges().get(0));
     assertEquals(1, mapping.getdnaToProt()[0].getToRanges().size());
-    assertArrayEquals(new int[] { 1, 138 }, mapping.getdnaToProt()[0]
-            .getToRanges().get(0));
+    assertArrayEquals(new int[] { 1, 138 },
+            mapping.getdnaToProt()[0].getToRanges().get(0));
   }
 
   /**
@@ -141,11 +141,11 @@ public class Gff3HelperTest
     assertSame(newseqs.get(0), mapping.getAaSeqs()[0]);
     assertEquals(1, mapping.getdnaToProt().length);
     assertEquals(1, mapping.getdnaToProt()[0].getFromRanges().size());
-    assertArrayEquals(new int[] { 12923, 13060 }, mapping.getdnaToProt()[0]
-            .getFromRanges().get(0));
+    assertArrayEquals(new int[] { 12923, 13060 },
+            mapping.getdnaToProt()[0].getFromRanges().get(0));
     assertEquals(1, mapping.getdnaToProt()[0].getToRanges().size());
-    assertArrayEquals(new int[] { 138, 1 }, mapping.getdnaToProt()[0]
-            .getToRanges().get(0));
+    assertArrayEquals(new int[] { 138, 1 },
+            mapping.getdnaToProt()[0].getToRanges().get(0));
   }
 
   /**
@@ -223,14 +223,14 @@ public class Gff3HelperTest
     assertEquals(1, mapping.getdnaToProt().length);
     assertEquals(2, mapping.getdnaToProt()[0].getFromRanges().size());
     // the two spliced dna ranges are combined in one MapList
-    assertArrayEquals(new int[] { 12923, 13060 }, mapping.getdnaToProt()[0]
-            .getFromRanges().get(0));
-    assertArrayEquals(new int[] { 13411, 13550 }, mapping.getdnaToProt()[0]
-            .getFromRanges().get(1));
+    assertArrayEquals(new int[] { 12923, 13060 },
+            mapping.getdnaToProt()[0].getFromRanges().get(0));
+    assertArrayEquals(new int[] { 13411, 13550 },
+            mapping.getdnaToProt()[0].getFromRanges().get(1));
     assertEquals(1, mapping.getdnaToProt()[0].getToRanges().size());
     // the two cdna ranges are merged into one contiguous region
-    assertArrayEquals(new int[] { 1, 278 }, mapping.getdnaToProt()[0]
-            .getToRanges().get(0));
+    assertArrayEquals(new int[] { 1, 278 },
+            mapping.getdnaToProt()[0].getToRanges().get(0));
   }
 
   @Test(groups = "Functional")
@@ -252,7 +252,8 @@ public class Gff3HelperTest
 
     // Ensembl variant feature - extract "alleles" value
     // may be sequence_variant or a sub-type in the sequence ontology
-    sf = new SequenceFeature("feature_variant", "desc", 10, 20, 3f, "group");
+    sf = new SequenceFeature("feature_variant", "desc", 10, 20, 3f,
+            "group");
     List<String> atts = new ArrayList<String>();
     atts.add("A");
     atts.add("C");