X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fio%2Fgff%2FInterProScanHelperTest.java;h=1d08a4c9126feacd42ed9edc5243f759e25ff3b3;hb=57738a1f3c19b1c3a00bd3ac5108f8cd0af32f99;hp=59935ddf95a17ce727411eb2cc294b3a68e6a4ad;hpb=a5ad4f49249c216517d76303c731a8ca0d1f0c55;p=jalview.git diff --git a/test/jalview/io/gff/InterProScanHelperTest.java b/test/jalview/io/gff/InterProScanHelperTest.java index 59935dd..1d08a4c 100644 --- a/test/jalview/io/gff/InterProScanHelperTest.java +++ b/test/jalview/io/gff/InterProScanHelperTest.java @@ -80,8 +80,8 @@ public class InterProScanHelperTest assertEquals("match$17_5_30", newseqs.get(0).getName()); assertNotNull(newseqs.get(0).getSequenceFeatures()); - assertEquals(1, newseqs.get(0).getSequenceFeatures().length); - SequenceFeature sf = newseqs.get(0).getSequenceFeatures()[0]; + assertEquals(1, newseqs.get(0).getSequenceFeatures().size()); + SequenceFeature sf = newseqs.get(0).getSequenceFeatures().get(0); assertEquals(1, sf.getBegin()); assertEquals(26, sf.getEnd()); assertEquals("Pfam", sf.getType()); @@ -102,11 +102,11 @@ public class InterProScanHelperTest assertSame(newseqs.get(0), mapping.getAaSeqs()[0]); assertEquals(1, mapping.getdnaToProt().length); assertEquals(1, mapping.getdnaToProt()[0].getFromRanges().size()); - assertArrayEquals(new int[] { 5, 30 }, mapping.getdnaToProt()[0] - .getFromRanges().get(0)); + assertArrayEquals(new int[] { 5, 30 }, + mapping.getdnaToProt()[0].getFromRanges().get(0)); assertEquals(1, mapping.getdnaToProt()[0].getToRanges().size()); - assertArrayEquals(new int[] { 1, 26 }, mapping.getdnaToProt()[0] - .getToRanges().get(0)); + assertArrayEquals(new int[] { 1, 26 }, + mapping.getdnaToProt()[0].getToRanges().get(0)); } }