X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fio%2Fgff%2FInterProScanHelperTest.java;h=bcccf3565a859f12b128379e0300ecbfb43454f7;hb=717215fa552eba980616292d76cd0032c548e459;hp=2ef4c99396e15ba50b71483386e602fe14550fb1;hpb=8f920d337154e092f5f9056ffde3cdf2735eca43;p=jalview.git diff --git a/test/jalview/io/gff/InterProScanHelperTest.java b/test/jalview/io/gff/InterProScanHelperTest.java index 2ef4c99..bcccf35 100644 --- a/test/jalview/io/gff/InterProScanHelperTest.java +++ b/test/jalview/io/gff/InterProScanHelperTest.java @@ -1,3 +1,23 @@ +/* + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors + * + * This file is part of Jalview. + * + * Jalview is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation, either version 3 + * of the License, or (at your option) any later version. + * + * Jalview is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty + * of MERCHANTABILITY or FITNESS FOR A PARTICULAR + * PURPOSE. See the GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License + * along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. + */ package jalview.io.gff; import static org.testng.AssertJUnit.assertEquals; @@ -11,17 +31,26 @@ import jalview.datamodel.AlignmentI; import jalview.datamodel.Sequence; import jalview.datamodel.SequenceDummy; import jalview.datamodel.SequenceI; +import jalview.gui.JvOptionPane; import java.io.IOException; import java.util.ArrayList; import java.util.List; import java.util.Map; +import org.testng.annotations.BeforeClass; import org.testng.annotations.Test; public class InterProScanHelperTest { + @BeforeClass(alwaysRun = true) + public void setUpJvOptionPane() + { + JvOptionPane.setInteractiveMode(false); + JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION); + } + /** * Test processing one InterProScan GFF line * @@ -38,7 +67,7 @@ public class InterProScanHelperTest seq.createDatasetSequence(); AlignmentI align = new Alignment(new SequenceI[] {}); Map> set = Gff3Helper.parseNameValuePairs(gff[8]); - + /* * this should create a mapping from Prot1/5-30 to virtual sequence * match$17_5_30 (added to newseqs) positions 1-26