X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fio%2Fgff%2FInterProScanHelperTest.java;h=dde83a35848123f2a24eab9dac65909025ffcf54;hb=136c0793b90b72b928c4d77dc109dd5c644e00d3;hp=bcccf3565a859f12b128379e0300ecbfb43454f7;hpb=8677e6e34e291edc58c1da2fc9c958473754143f;p=jalview.git diff --git a/test/jalview/io/gff/InterProScanHelperTest.java b/test/jalview/io/gff/InterProScanHelperTest.java index bcccf35..dde83a3 100644 --- a/test/jalview/io/gff/InterProScanHelperTest.java +++ b/test/jalview/io/gff/InterProScanHelperTest.java @@ -21,6 +21,7 @@ package jalview.io.gff; import static org.testng.AssertJUnit.assertEquals; +import static org.testng.AssertJUnit.assertNotNull; import static org.testng.AssertJUnit.assertSame; import static org.testng.AssertJUnit.assertTrue; import static org.testng.internal.junit.ArrayAsserts.assertArrayEquals; @@ -30,6 +31,7 @@ import jalview.datamodel.Alignment; import jalview.datamodel.AlignmentI; import jalview.datamodel.Sequence; import jalview.datamodel.SequenceDummy; +import jalview.datamodel.SequenceFeature; import jalview.datamodel.SequenceI; import jalview.gui.JvOptionPane; @@ -76,6 +78,16 @@ public class InterProScanHelperTest assertEquals(1, newseqs.size()); assertTrue(newseqs.get(0) instanceof SequenceDummy); assertEquals("match$17_5_30", newseqs.get(0).getName()); + + assertNotNull(newseqs.get(0).getSequenceFeatures()); + assertEquals(1, newseqs.get(0).getSequenceFeatures().size()); + SequenceFeature sf = newseqs.get(0).getSequenceFeatures().get(0); + assertEquals(1, sf.getBegin()); + assertEquals(26, sf.getEnd()); + assertEquals("Pfam", sf.getType()); + assertEquals("4Fe-4S dicluster domain", sf.getDescription()); + assertEquals("InterProScan", sf.getFeatureGroup()); + assertEquals(1, align.getCodonFrames().size()); AlignedCodonFrame mapping = align.getCodonFrames().iterator().next();