X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fproject%2FJalview2xmlTests.java;fp=test%2Fjalview%2Fproject%2FJalview2xmlTests.java;h=af52edad5c3f42dd974ce358195f19d29c62317d;hb=b7e9e2edf0c1557089eff0e4b5c17c0b31e698c2;hp=13df7356a21c53c148e8929ae194a192fb532c83;hpb=10d0fcd66355b5444126323e209241a414287518;p=jalview.git

diff --git a/test/jalview/project/Jalview2xmlTests.java b/test/jalview/project/Jalview2xmlTests.java
index 13df735..af52eda 100644
--- a/test/jalview/project/Jalview2xmlTests.java
+++ b/test/jalview/project/Jalview2xmlTests.java
@@ -1571,7 +1571,8 @@ public class Jalview2xmlTests extends Jalview2xmlBase
     float[][] vals = ContactMatrix.fromFloatStringToContacts(content,
             sq.getLength(), sq.getLength());
     assertEquals(vals[3][4], paevals[3][4]);
-
+    dummyMat.makeGroups(0.5f, false);
+    Assert.assertNotSame(dummyMat.getNewick(), "");
     AlignmentAnnotation paeCm = sq.addContactList(dummyMat);
     al.addAnnotation(paeCm);
     File tfile = File.createTempFile("testStoreAndRecoverPAEmatrix",
@@ -1602,6 +1603,10 @@ public class Jalview2xmlTests extends Jalview2xmlBase
         Assert.assertEquals(oldCM.getContactAt(j), newCM.getContactAt(j));
       }
     }
+    Assert.assertEquals(restoredMat.hasGroups(), dummyMat.hasGroups());
+    Assert.assertEquals(restoredMat.getGroups(), dummyMat.getGroups());
+    Assert.assertEquals(restoredMat.hasTree(), dummyMat.hasTree());
+    Assert.assertEquals(restoredMat.getNewick(), dummyMat.getNewick());
 
   }