X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Frenderer%2FResidueShaderTest.java;fp=test%2Fjalview%2Frenderer%2FResidueShaderTest.java;h=df94d8c55e3ea5263eaeaff40a741008fda4ba39;hb=57738a1f3c19b1c3a00bd3ac5108f8cd0af32f99;hp=eba5f59d76fcfae034215437b0add9b95a04f5e5;hpb=e7338a61f3ce96dadf44ac80b2b32cc5ba4b94c8;p=jalview.git

diff --git a/test/jalview/renderer/ResidueShaderTest.java b/test/jalview/renderer/ResidueShaderTest.java
index eba5f59..df94d8c 100644
--- a/test/jalview/renderer/ResidueShaderTest.java
+++ b/test/jalview/renderer/ResidueShaderTest.java
@@ -161,9 +161,12 @@ public class ResidueShaderTest
     assertEquals(Color.WHITE, ccs.applyConservation(colour, 4));
     assertEquals(Color.WHITE, ccs.applyConservation(colour, 5));
     assertEquals(Color.WHITE, ccs.applyConservation(colour, 6));
-    assertEquals(new Color(235, 225, 215), ccs.applyConservation(colour, 7));
-    assertEquals(new Color(215, 195, 175), ccs.applyConservation(colour, 8));
-    assertEquals(new Color(195, 165, 135), ccs.applyConservation(colour, 9));
+    assertEquals(new Color(235, 225, 215),
+            ccs.applyConservation(colour, 7));
+    assertEquals(new Color(215, 195, 175),
+            ccs.applyConservation(colour, 8));
+    assertEquals(new Color(195, 165, 135),
+            ccs.applyConservation(colour, 9));
     assertEquals(colour, ccs.applyConservation(colour, 10));
     assertEquals(colour, ccs.applyConservation(colour, 11));
     assertEquals(Color.WHITE, ccs.applyConservation(colour, 12));
@@ -186,10 +189,10 @@ public class ResidueShaderTest
     colours[23] = Color.red; // gap colour
     ColourSchemeI cs = new UserColourScheme(colours);
     rs = new ResidueShader(cs);
-  
+
     assertEquals(Color.red, rs.findColour(' ', 7, null));
     assertEquals(Color.blue, rs.findColour('Q', 7, null));
-  
+
     /*
      * stub Conservation to return a given consensus string
      */
@@ -204,14 +207,14 @@ public class ResidueShaderTest
       }
     };
     rs.setConservation(cons);
-  
+
     /*
      * with 0% threshold, there should be no fading
      */
     rs.setConservationInc(0);
     assertEquals(Color.red, rs.findColour(' ', 7, null));
     assertEquals(Color.blue, rs.findColour('Q', 7, null));
-  
+
     /*
      * with 40% threshold, 'fade factor' is 
      * (11-score)/10 * 40/20 = (11-score)/5
@@ -261,12 +264,14 @@ public class ResidueShaderTest
   protected ProfilesI getStubConsensus(final String modalResidue,
           final float pid)
   {
-    ProfilesI consensus = new ProfilesI() {
+    ProfilesI consensus = new ProfilesI()
+    {
 
       @Override
       public ProfileI get(int i)
       {
-        return new ProfileI() {
+        return new ProfileI()
+        {
           @Override
           public void setCounts(ResidueCount residueCounts)
           {
@@ -312,7 +317,8 @@ public class ResidueShaderTest
           public int getNonGapped()
           {
             return 0;
-         }};
+          }
+        };
       }
 
       @Override
@@ -326,7 +332,7 @@ public class ResidueShaderTest
       {
         return 0;
       }
-      
+
     };
     return consensus;
   }