X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Frenderer%2Fseqfeatures%2FFeatureRendererTest.java;h=da7cadabdc2ed49198b74ae9fd81134ba6c07915;hb=77b160b053c41a5d5c95bf1bbc0fbd066435f70d;hp=03398c02b9bf42602b0842921d5fd94269047164;hpb=1aa039ed9dfe0528cb7b40231734cf3004452c39;p=jalview.git

diff --git a/test/jalview/renderer/seqfeatures/FeatureRendererTest.java b/test/jalview/renderer/seqfeatures/FeatureRendererTest.java
index 03398c0..da7cada 100644
--- a/test/jalview/renderer/seqfeatures/FeatureRendererTest.java
+++ b/test/jalview/renderer/seqfeatures/FeatureRendererTest.java
@@ -357,6 +357,14 @@ public class FeatureRendererTest
     assertTrue(features.contains(sf2) || features.contains(sf3));
     assertFalse(features.contains(sf2) && features.contains(sf3));
     assertTrue(features.contains(sf5));
+
+    /*
+     * no filtering if transparency is applied
+     */
+    fr.setTransparency(0.5f);
+    features = seq.getSequenceFeatures();
+    fr.filterFeaturesForDisplay(features);
+    assertEquals(features.size(), 5);
   }
 
   @Test(groups = "Functional")
@@ -378,11 +386,12 @@ public class FeatureRendererTest
 
     /*
      * hide feature type, then unhide
+     * - feature type visibility should not affect the result
      */
     FeatureSettingsBean[] data = new FeatureSettingsBean[1];
     data[0] = new FeatureSettingsBean("Cath", fc, null, false);
     fr.setFeaturePriority(data);
-    assertNull(fr.getColour(sf1));
+    assertEquals(fr.getColour(sf1), Color.red);
     data[0] = new FeatureSettingsBean("Cath", fc, null, true);
     fr.setFeaturePriority(data);
     assertEquals(fr.getColour(sf1), Color.red);