X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fschemes%2FColourSchemePropertyTest.java;fp=test%2Fjalview%2Fschemes%2FColourSchemePropertyTest.java;h=f71d647f8fca831b4b81ad2d6b62484075c5df1f;hb=ca8504cf9d10874dce9f07cf7a9d933853fe0dd0;hp=11562b8feb492d6e3dc7b23f558f5a7189986a03;hpb=775e7bc104584e88dddcea73fbf02c66f5200c16;p=jalview.git diff --git a/test/jalview/schemes/ColourSchemePropertyTest.java b/test/jalview/schemes/ColourSchemePropertyTest.java index 11562b8..f71d647 100644 --- a/test/jalview/schemes/ColourSchemePropertyTest.java +++ b/test/jalview/schemes/ColourSchemePropertyTest.java @@ -76,51 +76,54 @@ public class ColourSchemePropertyTest SequenceI seq = new Sequence("Seq1", "abcd"); AlignmentI al = new Alignment(new SequenceI[] { seq }); // the strings here correspond to JalviewColourScheme.toString() values - ColourSchemeI cs = ColourSchemeProperty.getColourScheme(al, "Clustal"); + ColourSchemeI cs = ColourSchemeProperty.getColourScheme(null, al, + "Clustal"); assertTrue(cs instanceof ClustalxColourScheme); // not case-sensitive - cs = ColourSchemeProperty.getColourScheme(al, "CLUSTAL"); + cs = ColourSchemeProperty.getColourScheme(null, al, "CLUSTAL"); assertTrue(cs instanceof ClustalxColourScheme); - cs = ColourSchemeProperty.getColourScheme(al, "clustal"); + cs = ColourSchemeProperty.getColourScheme(null, al, "clustal"); assertTrue(cs instanceof ClustalxColourScheme); - cs = ColourSchemeProperty.getColourScheme(al, "Blosum62"); + cs = ColourSchemeProperty.getColourScheme(null, al, "Blosum62"); assertTrue(cs instanceof Blosum62ColourScheme); - cs = ColourSchemeProperty.getColourScheme(al, "% Identity"); + cs = ColourSchemeProperty.getColourScheme(null, al, "% Identity"); assertTrue(cs instanceof PIDColourScheme); - cs = ColourSchemeProperty.getColourScheme(al, "Zappo"); + cs = ColourSchemeProperty.getColourScheme(null, al, "Zappo"); assertTrue(cs instanceof ZappoColourScheme); - cs = ColourSchemeProperty.getColourScheme(al, "Taylor"); + cs = ColourSchemeProperty.getColourScheme(null, al, "Taylor"); assertTrue(cs instanceof TaylorColourScheme); - cs = ColourSchemeProperty.getColourScheme(al, "Hydrophobic"); + cs = ColourSchemeProperty.getColourScheme(null, al, "Hydrophobic"); assertTrue(cs instanceof HydrophobicColourScheme); - cs = ColourSchemeProperty.getColourScheme(al, "Helix Propensity"); + cs = ColourSchemeProperty.getColourScheme(null, al, "Helix Propensity"); assertTrue(cs instanceof HelixColourScheme); - cs = ColourSchemeProperty.getColourScheme(al, "Strand Propensity"); + cs = ColourSchemeProperty.getColourScheme(null, al, + "Strand Propensity"); assertTrue(cs instanceof StrandColourScheme); - cs = ColourSchemeProperty.getColourScheme(al, "Turn Propensity"); + cs = ColourSchemeProperty.getColourScheme(null, al, "Turn Propensity"); assertTrue(cs instanceof TurnColourScheme); - cs = ColourSchemeProperty.getColourScheme(al, "Buried Index"); + cs = ColourSchemeProperty.getColourScheme(null, al, "Buried Index"); assertTrue(cs instanceof BuriedColourScheme); - cs = ColourSchemeProperty.getColourScheme(al, "Nucleotide"); + cs = ColourSchemeProperty.getColourScheme(null, al, "Nucleotide"); assertTrue(cs instanceof NucleotideColourScheme); - cs = ColourSchemeProperty.getColourScheme(al, "Purine/Pyrimidine"); + cs = ColourSchemeProperty.getColourScheme(null, al, + "Purine/Pyrimidine"); assertTrue(cs instanceof PurinePyrimidineColourScheme); - cs = ColourSchemeProperty.getColourScheme(al, "T-Coffee Scores"); + cs = ColourSchemeProperty.getColourScheme(null, al, "T-Coffee Scores"); assertTrue(cs instanceof TCoffeeColourScheme); - cs = ColourSchemeProperty.getColourScheme(al, "RNA Helices"); + cs = ColourSchemeProperty.getColourScheme(null, al, "RNA Helices"); assertTrue(cs instanceof RNAHelicesColour); // 'None' is a special value - assertNull(ColourSchemeProperty.getColourScheme(al, "None")); - assertNull(ColourSchemeProperty.getColourScheme(al, "none")); + assertNull(ColourSchemeProperty.getColourScheme(null, al, "None")); + assertNull(ColourSchemeProperty.getColourScheme(null, al, "none")); // default is to convert the name into a fixed colour - cs = ColourSchemeProperty.getColourScheme(al, "elephants"); + cs = ColourSchemeProperty.getColourScheme(null, al, "elephants"); assertTrue(cs instanceof UserColourScheme); /* * explicit aa colours */ UserColourScheme ucs = (UserColourScheme) ColourSchemeProperty - .getColourScheme(al, + .getColourScheme(null, al, "R,G=red;C=blue;c=green;Q=10,20,30;S,T=11ffdd"); assertEquals(ucs.findColour('H'), Color.white); assertEquals(ucs.findColour('R'), Color.red);