X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fschemes%2FFeatureColourTest.java;h=99542ae3532df95a7427f0bf0dff0e6726a9c01f;hb=bd7b3138379c2db8507fe7e8d25f5a921e2d9df7;hp=2eb718b68d86ab855ae22c620dd5f990bed8bcbe;hpb=007f2c0fa4563baa95d43da08b5e4edc99ddc9a0;p=jalview.git

diff --git a/test/jalview/schemes/FeatureColourTest.java b/test/jalview/schemes/FeatureColourTest.java
index 2eb718b..99542ae 100644
--- a/test/jalview/schemes/FeatureColourTest.java
+++ b/test/jalview/schemes/FeatureColourTest.java
@@ -523,11 +523,60 @@ public class FeatureColourTest
     assertFalse(fc.hasThreshold());
     assertEquals(Color.RED, fc.getMinColour());
     assertEquals(Color.GREEN, fc.getMaxColour());
+    assertEquals(Color.RED, fc.getNoColour());
     assertEquals(10f, fc.getMin());
     assertEquals(20f, fc.getMax());
     assertTrue(fc.isAutoScaled());
 
     /*
+     * the same, with 'no value colour' specified as max
+     */
+    fc = FeatureColour
+            .parseJalviewFeatureColour("red|green|novaluemax|10.0|20.0");
+    assertEquals(Color.RED, fc.getMinColour());
+    assertEquals(Color.GREEN, fc.getMaxColour());
+    assertEquals(Color.GREEN, fc.getNoColour());
+    assertEquals(10f, fc.getMin());
+    assertEquals(20f, fc.getMax());
+
+    /*
+     * the same, with 'no value colour' specified as min
+     */
+    fc = FeatureColour
+            .parseJalviewFeatureColour("red|green|novalueMin|10.0|20.0");
+    assertEquals(Color.RED, fc.getMinColour());
+    assertEquals(Color.GREEN, fc.getMaxColour());
+    assertEquals(Color.RED, fc.getNoColour());
+    assertEquals(10f, fc.getMin());
+    assertEquals(20f, fc.getMax());
+
+    /*
+     * the same, with 'no value colour' specified as none
+     */
+    fc = FeatureColour
+            .parseJalviewFeatureColour("red|green|novaluenone|10.0|20.0");
+    assertEquals(Color.RED, fc.getMinColour());
+    assertEquals(Color.GREEN, fc.getMaxColour());
+    assertNull(fc.getNoColour());
+    assertEquals(10f, fc.getMin());
+    assertEquals(20f, fc.getMax());
+
+    /*
+     * the same, with invalid 'no value colour'
+     */
+    try
+    {
+      fc = FeatureColour
+              .parseJalviewFeatureColour("red|green|blue|10.0|20.0");
+      fail("expected exception");
+    } catch (IllegalArgumentException e)
+    {
+      assertEquals(
+              "Couldn't parse the minimum value for graduated colour ('blue')",
+              e.getMessage());
+    }
+
+    /*
      * graduated colour (explicitly by 'score') (no threshold)
      */
     fc = FeatureColour
@@ -663,4 +712,101 @@ public class FeatureColourTest
     Color expected = new Color(70, 120, 170);
     assertEquals(expected, fc.getColor(sf));
   }
+
+  /**
+   * Test description of feature colour suitable for a tooltip
+   */
+  @Test(groups = { "Functional" })
+  public void testGetDescription()
+  {
+    /*
+     * plain colour
+     */
+    FeatureColour fc = new FeatureColour(Color.RED);
+    assertEquals(
+            String.format("r=%d,g=%d,b=%d", Color.RED.getRed(),
+                    Color.red.getGreen(), Color.red.getBlue()),
+            fc.getDescription());
+  
+    /*
+     * colour by label (no threshold)
+     */
+    fc = new FeatureColour();
+    fc.setColourByLabel(true);
+    assertEquals("By Label", fc.getDescription());
+  
+    /*
+     * colour by attribute text (no threshold)
+     */
+    fc = new FeatureColour();
+    fc.setColourByLabel(true);
+    fc.setAttributeName("CLIN_SIG");
+    assertEquals("By CLIN_SIG", fc.getDescription());
+  
+    /*
+     * colour by label (above score threshold) 
+     */
+    fc = new FeatureColour();
+    fc.setColourByLabel(true);
+    fc.setAutoScaled(false);
+    fc.setThreshold(12.5f);
+    fc.setAboveThreshold(true);
+    assertEquals("By Label (Score > 12.5)",
+            fc.getDescription());
+  
+    /*
+     * colour by label (below score threshold)
+     */
+    fc.setBelowThreshold(true);
+    assertEquals("By Label (Score < 12.5)",
+            fc.getDescription());
+  
+    /*
+     * colour by attributes text (below score threshold)
+     */
+    fc.setBelowThreshold(true);
+    fc.setAttributeName("CSQ", "Consequence");
+    assertEquals(
+            "By CSQ:Consequence (Score < 12.5)",
+            fc.getDescription());
+  
+    /*
+     * graduated colour by score, no threshold
+     */
+    fc = new FeatureColour(Color.GREEN, Color.RED, 12f, 25f);
+    assertEquals("By Score", fc.getDescription());
+  
+    /*
+     * graduated colour by score, below threshold
+     */
+    fc.setThreshold(12.5f);
+    fc.setBelowThreshold(true);
+    assertEquals("By Score (< 12.5)",
+            fc.getDescription());
+  
+    /*
+     * graduated colour by score, above threshold
+     */
+    fc.setThreshold(12.5f);
+    fc.setAboveThreshold(true);
+    fc.setAutoScaled(false);
+    assertEquals("By Score (> 12.5)",
+            fc.getDescription());
+
+    /*
+     * graduated colour by attribute, no threshold
+     */
+    fc.setAttributeName("CSQ", "AF");
+    fc.setAboveThreshold(false);
+    fc.setAutoScaled(false);
+    assertEquals("By CSQ:AF", fc.getDescription());
+  
+    /*
+     * graduated colour by attribute, above threshold
+     */
+    fc.setAboveThreshold(true);
+    fc.setAutoScaled(false);
+    assertEquals("By CSQ:AF (> 12.5)",
+            fc.getDescription());
+  }
 }