X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fschemes%2FHmmerLocalBackgroundTest.java;fp=test%2Fjalview%2Fschemes%2FHMMERAlignmentColourSchemeTest.java;h=991adb577219211c1a9ef159dfbd5080903e1112;hb=4a1114e5c20bb42ec0bf9fb2a85b54c85ca6c40e;hp=0907c9a924426e3bbf379d56734d52e6a51df8a8;hpb=51d3f6808e74f158d2ba4807ae4dbf6001b94e2b;p=jalview.git diff --git a/test/jalview/schemes/HMMERAlignmentColourSchemeTest.java b/test/jalview/schemes/HmmerLocalBackgroundTest.java similarity index 95% rename from test/jalview/schemes/HMMERAlignmentColourSchemeTest.java rename to test/jalview/schemes/HmmerLocalBackgroundTest.java index 0907c9a..991adb5 100644 --- a/test/jalview/schemes/HMMERAlignmentColourSchemeTest.java +++ b/test/jalview/schemes/HmmerLocalBackgroundTest.java @@ -15,7 +15,7 @@ import java.net.MalformedURLException; import org.testng.annotations.Test; -public class HMMERAlignmentColourSchemeTest { +public class HmmerLocalBackgroundTest { @Test(groups = "Functional") public void testFindColour() throws MalformedURLException, IOException @@ -34,7 +34,7 @@ public class HMMERAlignmentColourSchemeTest { SequenceI seq1 = new Sequence("seq1", "AAMMMKKKVV"); SequenceI seq2 = new Sequence("seq2", "aAM-QKRSSSL"); AnnotatedCollectionI ac = new Alignment(new SequenceI[] { seq1, seq2 }); - ColourSchemeI scheme = new HMMERAlignmentColourScheme(ac, + ColourSchemeI scheme = new HmmerLocalBackground(ac, file.getHMM()); /*