X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fschemes%2FJalviewColourSchemeTest.java;fp=test%2Fjalview%2Fschemes%2FJalviewColourSchemeTest.java;h=8bc089324877e0dcc20dbad3327921f42bf41bba;hb=b0cee3aaf7d8873910939f97b6acb217d518968d;hp=0000000000000000000000000000000000000000;hpb=9d15a20b1f34c76427da5ec9274ff97a1ca49393;p=jalview.git

diff --git a/test/jalview/schemes/JalviewColourSchemeTest.java b/test/jalview/schemes/JalviewColourSchemeTest.java
new file mode 100644
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+++ b/test/jalview/schemes/JalviewColourSchemeTest.java
@@ -0,0 +1,82 @@
+package jalview.schemes;
+
+import static org.testng.Assert.assertNull;
+import static org.testng.Assert.assertSame;
+import static org.testng.Assert.assertTrue;
+
+import jalview.datamodel.Alignment;
+import jalview.datamodel.AlignmentI;
+import jalview.datamodel.Sequence;
+import jalview.datamodel.SequenceI;
+
+import org.testng.annotations.Test;
+
+public class JalviewColourSchemeTest
+{
+  @Test
+  public void testForName()
+  {
+    assertSame(JalviewColourScheme.Clustal,
+            JalviewColourScheme.forName("Clustal"));
+    assertSame(JalviewColourScheme.Clustal,
+            JalviewColourScheme.forName("CLUSTAL"));
+    assertSame(JalviewColourScheme.Blosum62,
+            JalviewColourScheme.forName("Blosum62"));
+    assertSame(JalviewColourScheme.PID,
+            JalviewColourScheme.forName("% Identity"));
+    assertSame(JalviewColourScheme.Hydrophobic,
+            JalviewColourScheme.forName("Hydrophobic"));
+    assertSame(JalviewColourScheme.Zappo,
+            JalviewColourScheme.forName("Zappo"));
+    assertSame(JalviewColourScheme.Taylor,
+            JalviewColourScheme.forName("Taylor"));
+    assertSame(JalviewColourScheme.Helix,
+            JalviewColourScheme.forName("Helix Propensity"));
+    assertSame(JalviewColourScheme.Strand,
+            JalviewColourScheme.forName("Strand Propensity"));
+    assertSame(JalviewColourScheme.Turn,
+            JalviewColourScheme.forName("Turn Propensity"));
+    assertSame(JalviewColourScheme.Buried,
+            JalviewColourScheme.forName("Buried Index"));
+    assertSame(JalviewColourScheme.Nucleotide,
+            JalviewColourScheme.forName("Nucleotide"));
+    assertSame(JalviewColourScheme.PurinePyrimidine,
+            JalviewColourScheme.forName("Purine/Pyrimidine"));
+    assertSame(JalviewColourScheme.TCoffee,
+            JalviewColourScheme.forName("T-Coffee Scores"));
+    assertSame(JalviewColourScheme.RNAHelices,
+            JalviewColourScheme.forName("RNA Helices"));
+    // assertSame(JalviewColourScheme.RNAInteraction,
+    // JalviewColourScheme.forName("RNA Interaction type"));
+    assertSame(JalviewColourScheme.UserDefined,
+            JalviewColourScheme.forName("User Defined"));
+
+    assertNull(JalviewColourScheme.forName("PID"));
+    assertNull(JalviewColourScheme.forName(""));
+    assertNull(JalviewColourScheme.forName(null));
+  }
+
+  @Test
+  public void testGetColourScheme()
+  {
+    SequenceI seq = new Sequence("Seq1", "abcd");
+    AlignmentI al = new Alignment(new SequenceI[] { seq });
+    assertTrue(JalviewColourScheme.Clustal.getColourScheme(al) instanceof ClustalxColourScheme);
+    assertTrue(JalviewColourScheme.Blosum62.getColourScheme(al) instanceof Blosum62ColourScheme);
+    assertTrue(JalviewColourScheme.PID.getColourScheme(al) instanceof PIDColourScheme);
+    assertTrue(JalviewColourScheme.Hydrophobic.getColourScheme(al) instanceof HydrophobicColourScheme);
+    assertTrue(JalviewColourScheme.Zappo.getColourScheme(al) instanceof ZappoColourScheme);
+    assertTrue(JalviewColourScheme.Taylor.getColourScheme(al) instanceof TaylorColourScheme);
+    assertTrue(JalviewColourScheme.Helix.getColourScheme(al) instanceof HelixColourScheme);
+    assertTrue(JalviewColourScheme.Strand.getColourScheme(al) instanceof StrandColourScheme);
+    assertTrue(JalviewColourScheme.Turn.getColourScheme(al) instanceof TurnColourScheme);
+    assertTrue(JalviewColourScheme.Buried.getColourScheme(al) instanceof BuriedColourScheme);
+    assertTrue(JalviewColourScheme.Nucleotide.getColourScheme(al) instanceof NucleotideColourScheme);
+    assertTrue(JalviewColourScheme.PurinePyrimidine.getColourScheme(al) instanceof PurinePyrimidineColourScheme);
+    assertTrue(JalviewColourScheme.TCoffee.getColourScheme(al) instanceof TCoffeeColourScheme);
+    assertTrue(JalviewColourScheme.RNAHelices.getColourScheme(al) instanceof RNAHelicesColour);
+    // assertTrue(JalviewColourScheme.RNAInteraction.getColourScheme(al)
+    // instanceof RNAInteractionColourScheme);
+    assertTrue(JalviewColourScheme.UserDefined.getColourScheme(al) instanceof UserColourScheme);
+  }
+}