X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fschemes%2FJalviewColourSchemeTest.java;h=e8a70e4138344e9c9724c485b898f07ed0055bb7;hb=refs%2Fheads%2Fpatch%2FJAL-3584_cherrypickto-JAL-3676_2.11.1.1;hp=b5246bac32ffd2fd167ef51b01deaddd9916a978;hpb=a09d6f5c16b0e222806e035cd38bfb4c4eb92c75;p=jalview.git diff --git a/test/jalview/schemes/JalviewColourSchemeTest.java b/test/jalview/schemes/JalviewColourSchemeTest.java index b5246ba..e8a70e4 100644 --- a/test/jalview/schemes/JalviewColourSchemeTest.java +++ b/test/jalview/schemes/JalviewColourSchemeTest.java @@ -1,82 +1,51 @@ package jalview.schemes; -import static org.testng.Assert.assertNull; -import static org.testng.Assert.assertSame; +import static org.testng.Assert.assertEquals; import static org.testng.Assert.assertTrue; -import jalview.datamodel.Alignment; -import jalview.datamodel.AlignmentI; -import jalview.datamodel.Sequence; -import jalview.datamodel.SequenceI; - import org.testng.annotations.Test; public class JalviewColourSchemeTest { @Test(groups = "Functional") - public void testForName() + public void testGetSchemeClass() { - assertSame(JalviewColourScheme.Clustal, - JalviewColourScheme.forName("Clustal")); - assertSame(JalviewColourScheme.Clustal, - JalviewColourScheme.forName("CLUSTAL")); - assertSame(JalviewColourScheme.Blosum62, - JalviewColourScheme.forName("Blosum62")); - assertSame(JalviewColourScheme.PID, - JalviewColourScheme.forName("% Identity")); - assertSame(JalviewColourScheme.Hydrophobic, - JalviewColourScheme.forName("Hydrophobic")); - assertSame(JalviewColourScheme.Zappo, - JalviewColourScheme.forName("Zappo")); - assertSame(JalviewColourScheme.Taylor, - JalviewColourScheme.forName("Taylor")); - assertSame(JalviewColourScheme.Helix, - JalviewColourScheme.forName("Helix Propensity")); - assertSame(JalviewColourScheme.Strand, - JalviewColourScheme.forName("Strand Propensity")); - assertSame(JalviewColourScheme.Turn, - JalviewColourScheme.forName("Turn Propensity")); - assertSame(JalviewColourScheme.Buried, - JalviewColourScheme.forName("Buried Index")); - assertSame(JalviewColourScheme.Nucleotide, - JalviewColourScheme.forName("Nucleotide")); - assertSame(JalviewColourScheme.PurinePyrimidine, - JalviewColourScheme.forName("Purine/Pyrimidine")); - assertSame(JalviewColourScheme.TCoffee, - JalviewColourScheme.forName("T-Coffee Scores")); - assertSame(JalviewColourScheme.RNAHelices, - JalviewColourScheme.forName("RNA Helices")); - // assertSame(JalviewColourScheme.RNAInteraction, - // JalviewColourScheme.forName("RNA Interaction type")); - assertSame(JalviewColourScheme.UserDefined, - JalviewColourScheme.forName("User Defined")); - - assertNull(JalviewColourScheme.forName("PID")); - assertNull(JalviewColourScheme.forName("")); - assertNull(JalviewColourScheme.forName(null)); + assertTrue(JalviewColourScheme.Clustal.getSchemeClass() == ClustalxColourScheme.class); + assertTrue(JalviewColourScheme.Blosum62.getSchemeClass() == Blosum62ColourScheme.class); + assertTrue(JalviewColourScheme.PID.getSchemeClass() == PIDColourScheme.class); + assertTrue(JalviewColourScheme.Hydrophobic.getSchemeClass() == HydrophobicColourScheme.class); + assertTrue(JalviewColourScheme.Zappo.getSchemeClass() == ZappoColourScheme.class); + assertTrue(JalviewColourScheme.Taylor.getSchemeClass() == TaylorColourScheme.class); + assertTrue(JalviewColourScheme.Helix.getSchemeClass() == HelixColourScheme.class); + assertTrue(JalviewColourScheme.Strand.getSchemeClass() == StrandColourScheme.class); + assertTrue(JalviewColourScheme.Turn.getSchemeClass() == TurnColourScheme.class); + assertTrue(JalviewColourScheme.Buried.getSchemeClass() == BuriedColourScheme.class); + assertTrue(JalviewColourScheme.Nucleotide.getSchemeClass() == NucleotideColourScheme.class); + assertTrue(JalviewColourScheme.PurinePyrimidine.getSchemeClass() == PurinePyrimidineColourScheme.class); + assertTrue(JalviewColourScheme.TCoffee.getSchemeClass() == TCoffeeColourScheme.class); + assertTrue(JalviewColourScheme.RNAHelices.getSchemeClass() == RNAHelicesColour.class); + assertTrue(JalviewColourScheme.IdColour + .getSchemeClass() == IdColourScheme.class); } @Test(groups = "Functional") - public void testGetColourScheme() + public void testToString() { - SequenceI seq = new Sequence("Seq1", "abcd"); - AlignmentI al = new Alignment(new SequenceI[] { seq }); - assertTrue(JalviewColourScheme.Clustal.getColourScheme(al) instanceof ClustalxColourScheme); - assertTrue(JalviewColourScheme.Blosum62.getColourScheme(al) instanceof Blosum62ColourScheme); - assertTrue(JalviewColourScheme.PID.getColourScheme(al) instanceof PIDColourScheme); - assertTrue(JalviewColourScheme.Hydrophobic.getColourScheme(al) instanceof HydrophobicColourScheme); - assertTrue(JalviewColourScheme.Zappo.getColourScheme(al) instanceof ZappoColourScheme); - assertTrue(JalviewColourScheme.Taylor.getColourScheme(al) instanceof TaylorColourScheme); - assertTrue(JalviewColourScheme.Helix.getColourScheme(al) instanceof HelixColourScheme); - assertTrue(JalviewColourScheme.Strand.getColourScheme(al) instanceof StrandColourScheme); - assertTrue(JalviewColourScheme.Turn.getColourScheme(al) instanceof TurnColourScheme); - assertTrue(JalviewColourScheme.Buried.getColourScheme(al) instanceof BuriedColourScheme); - assertTrue(JalviewColourScheme.Nucleotide.getColourScheme(al) instanceof NucleotideColourScheme); - assertTrue(JalviewColourScheme.PurinePyrimidine.getColourScheme(al) instanceof PurinePyrimidineColourScheme); - assertTrue(JalviewColourScheme.TCoffee.getColourScheme(al) instanceof TCoffeeColourScheme); - assertTrue(JalviewColourScheme.RNAHelices.getColourScheme(al) instanceof RNAHelicesColour); - // assertTrue(JalviewColourScheme.RNAInteraction.getColourScheme(al) - // instanceof RNAInteractionColourScheme); - assertTrue(JalviewColourScheme.UserDefined.getColourScheme(al) instanceof UserColourScheme); + assertEquals(JalviewColourScheme.Clustal.toString(), "Clustal"); + assertEquals(JalviewColourScheme.Blosum62.toString(), "Blosum62"); + assertEquals(JalviewColourScheme.PID.toString(), "% Identity"); + assertEquals(JalviewColourScheme.Zappo.toString(), "Zappo"); + assertEquals(JalviewColourScheme.Taylor.toString(), "Taylor"); + assertEquals(JalviewColourScheme.Hydrophobic.toString(), "Hydrophobic"); + assertEquals(JalviewColourScheme.Helix.toString(), "Helix Propensity"); + assertEquals(JalviewColourScheme.Strand.toString(), "Strand Propensity"); + assertEquals(JalviewColourScheme.Turn.toString(), "Turn Propensity"); + assertEquals(JalviewColourScheme.Buried.toString(), "Buried Index"); + assertEquals(JalviewColourScheme.Nucleotide.toString(), "Nucleotide"); + assertEquals(JalviewColourScheme.PurinePyrimidine.toString(), + "Purine/Pyrimidine"); + assertEquals(JalviewColourScheme.TCoffee.toString(), "T-Coffee Scores"); + assertEquals(JalviewColourScheme.RNAHelices.toString(), "RNA Helices"); + assertEquals(JalviewColourScheme.IdColour.toString(), "Sequence ID"); } }