X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fschemes%2FScoreMatrixPrinter.java;h=293690b7e2cfa3cb9baecc7d07836508fde47045;hb=08c202dd3ef0f34bde305c11da9eec03520174dc;hp=099db3cd848a00e864286b618da863d498f29a56;hpb=213bb03dc91ef5af6aacbfc641d82420d0bdbb5a;p=jalview.git
diff --git a/test/jalview/schemes/ScoreMatrixPrinter.java b/test/jalview/schemes/ScoreMatrixPrinter.java
index 099db3c..293690b 100644
--- a/test/jalview/schemes/ScoreMatrixPrinter.java
+++ b/test/jalview/schemes/ScoreMatrixPrinter.java
@@ -1,28 +1,56 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.schemes;
-import java.util.Map;
+import jalview.api.analysis.ScoreModelI;
-import org.junit.Test;
+import java.util.Map;
+import org.testng.annotations.Test;
-public class ScoreMatrixPrinter
+public class ScoreMatrixPrinter
{
- @Test
+ @Test(groups = { "Functional" })
public void printAllMatrices()
{
- for (Map.Entry sm:((Map) ResidueProperties.scoreMatrices).entrySet())
+ for (Map.Entry sm : ResidueProperties.scoreMatrices
+ .entrySet())
{
- System.out.println("Matrix "+sm.getKey());
+ System.out.println("Matrix " + sm.getKey());
System.out.println(sm.getValue().toString());
}
}
- @Test
+
+ @Test(groups = { "Functional" })
public void printHTMLMatrices()
{
- for (Map.Entry sm:((Map) ResidueProperties.scoreMatrices).entrySet())
+ for (Map.Entry _sm : ResidueProperties.scoreMatrices
+ .entrySet())
{
- System.out.println("Matrix "+sm.getKey());
- System.out.println(sm.getValue().outputMatrix(true));
+ if (_sm.getValue() instanceof ScoreMatrix)
+ {
+ ScoreMatrix sm = (ScoreMatrix) _sm.getValue();
+ System.out.println("Matrix " + _sm.getKey());
+ System.out.println(sm.outputMatrix(true));
+ }
}
}