X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Furls%2FIdentifiersUrlProviderTest.java;h=eed58b0eeee55c1d15ef62785513c0acc9c8145a;hb=adca107ff292173bc844ad4a5c6c7eba958ad24a;hp=107dcda126d375143249d358a32d95eb4c3200cc;hpb=a1bf90058be8be92554ecbc5868982dcdbed5a80;p=jalview.git diff --git a/test/jalview/urls/IdentifiersUrlProviderTest.java b/test/jalview/urls/IdentifiersUrlProviderTest.java index 107dcda..eed58b0 100644 --- a/test/jalview/urls/IdentifiersUrlProviderTest.java +++ b/test/jalview/urls/IdentifiersUrlProviderTest.java @@ -38,8 +38,7 @@ import org.testng.annotations.Test; public class IdentifiersUrlProviderTest { - // Test identifiers.org download file - private static final String testIdOrgFile = "[{\"id\":\"MIR:00000002\",\"name\":\"ChEBI\",\"pattern\":\"^CHEBI:\\d+$\"," + private static final String testIdOrgFile = "{\"Local\": [{\"id\":\"MIR:00000002\",\"name\":\"ChEBI\",\"pattern\":\"^CHEBI:\\d+$\"," + "\"definition\":\"Chemical Entities of Biological Interest (ChEBI)\",\"prefix\":\"chebi\"," + "\"url\":\"http://identifiers.org/chebi\"},{\"id\":\"MIR:00000005\",\"name\":\"UniProt Knowledgebase\"," + "\"pattern\":\"^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\\.\\d+)?$\"," @@ -47,12 +46,12 @@ public class IdentifiersUrlProviderTest + "{\"id\":\"MIR:00000011\",\"name\":\"InterPro\",\"pattern\":\"^IPR\\d{6}$\",\"definition\":\"InterPro\",\"prefix\":\"interpro\"," + "\"url\":\"http://identifiers.org/interpro\"}," + "{\"id\":\"MIR:00000372\",\"name\":\"ENA\",\"pattern\":\"^[A-Z]+[0-9]+(\\.\\d+)?$\",\"definition\":\"The European Nucleotide Archive (ENA),\"" - + "\"prefix\":\"ena.embl\",\"url\":\"http://identifiers.org/ena.embl\"}]"; + + "\"prefix\":\"ena.embl\",\"url\":\"http://identifiers.org/ena.embl\"}]}"; private static final String[] dlinks = { - "UniProt Knowledgebase|http://identifiers.org/uniprot/$DB_ACCESSION$", - "InterPro|http://identifiers.org/interpro/$DB_ACCESSION$", - "ENA|http://identifiers.org/ena.embl/$DB_ACCESSION$" }; + "UniProt Knowledgebase|http://identifiers.org/uniprot/$DB_ACCESSION$|uniprot", + "InterPro|http://identifiers.org/interpro/$DB_ACCESSION$|interpro", + "ENA|http://identifiers.org/ena.embl/$DB_ACCESSION$|ena.embl" }; private static final String[] dlinks1 = { "MIR:00000011|http://identifiers.org/interpro/$DB_ACCESSION$",