X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fws%2FPDBSequenceFetcherTest.java;h=5a9e954f26fa89628c86429c346892f9dccfe9b2;hb=7ab5d6b0ba5fec1ea4a4239e79c476d841622485;hp=fc23faadc41e0a505bf9708a6ae7c60ced42d357;hpb=1889827c44c51f6353fe8619e5d44b421158af23;p=jalview.git diff --git a/test/jalview/ws/PDBSequenceFetcherTest.java b/test/jalview/ws/PDBSequenceFetcherTest.java index fc23faa..5a9e954 100644 --- a/test/jalview/ws/PDBSequenceFetcherTest.java +++ b/test/jalview/ws/PDBSequenceFetcherTest.java @@ -34,6 +34,7 @@ public class PDBSequenceFetcherTest { SequenceFetcher sf; + @Before public void setUp() throws Exception { @@ -43,25 +44,25 @@ public class PDBSequenceFetcherTest @Test public void testPdbPerChainRetrieve() throws Exception { - List sps = sf - .getSourceProxy("PDB"); + List sps = sf.getSourceProxy("PDB"); AlignmentI response = sps.get(0).getSequenceRecords("1QIPA"); - assertTrue(response!=null); - assertTrue(response.getHeight()==1); + assertTrue(response != null); + assertTrue(response.getHeight() == 1); } + @Test public void testRnaSeqRetrieve() throws Exception { - List sps = sf - .getSourceProxy("PDB"); + List sps = sf.getSourceProxy("PDB"); AlignmentI response = sps.get(0).getSequenceRecords("2GIS"); - assertTrue(response!=null); - assertTrue(response.getHeight()==1); - for (SequenceI sq:response.getSequences()) + assertTrue(response != null); + assertTrue(response.getHeight() == 1); + for (SequenceI sq : response.getSequences()) { - assertTrue("No annotation transfered to sequence.",sq.getAnnotation().length>0); - assertTrue("No PDBEntry on sequence.",sq.getPDBId().size()>0); - assertTrue("No RNA annotation on sequence.", sq.getRNA()!=null); + assertTrue("No annotation transfered to sequence.", + sq.getAnnotation().length > 0); + assertTrue("No PDBEntry on sequence.", sq.getPDBId().size() > 0); + assertTrue("No RNA annotation on sequence.", sq.getRNA() != null); } }