X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fws%2FPDBSequenceFetcherTest.java;h=e54d5b976c68da5bb4db65ed22ce9d84f8d8309f;hb=ab22918ab8fc67d30dad1fb1ae0f37e51f49df95;hp=775adf7d935598644cbabbd1886b29f6df60250d;hpb=3248fab37afe77c2d2c402bcc4db2bc1a3ce8b9f;p=jalview.git

diff --git a/test/jalview/ws/PDBSequenceFetcherTest.java b/test/jalview/ws/PDBSequenceFetcherTest.java
index 775adf7..e54d5b9 100644
--- a/test/jalview/ws/PDBSequenceFetcherTest.java
+++ b/test/jalview/ws/PDBSequenceFetcherTest.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -20,28 +20,37 @@
  */
 package jalview.ws;
 
-import static org.junit.Assert.*;
+import static org.testng.AssertJUnit.assertTrue;
+
+import jalview.bin.Cache;
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.SequenceI;
 import jalview.ws.seqfetcher.DbSourceProxy;
 
 import java.util.List;
 
-import org.junit.Before;
-import org.junit.Test;
+import org.testng.annotations.BeforeMethod;
+import org.testng.annotations.Test;
 
 public class PDBSequenceFetcherTest
 {
 
   SequenceFetcher sf;
 
-  @Before
+  @BeforeMethod
   public void setUp() throws Exception
   {
+    // ensure 'add annotation from structure' is selected
+    Cache.applicationProperties.setProperty("STRUCT_FROM_PDB",
+            Boolean.TRUE.toString());
+    Cache.applicationProperties.setProperty("ADD_SS_ANN",
+            Boolean.TRUE.toString());
+
     sf = new SequenceFetcher(false);
   }
 
-  @Test
+  @Test(groups =
+  { "Functional" }, enabled = false)
   public void testRnaSeqRetrieve() throws Exception
   {
     List<DbSourceProxy> sps = sf.getSourceProxy("PDB");