X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fws%2FSequenceFetcherTest.java;h=c643d6baa88f457e26b3f4c4d0c9870042d74ded;hb=f41806761ec9086c852941a7f91c890190fb522a;hp=70c6266e5f16d2610b6242ffefb2c01770724254;hpb=e7e569d85f161d6f508851d861ab3e76e2b4bbf9;p=jalview.git diff --git a/test/jalview/ws/SequenceFetcherTest.java b/test/jalview/ws/SequenceFetcherTest.java index 70c6266..c643d6b 100644 --- a/test/jalview/ws/SequenceFetcherTest.java +++ b/test/jalview/ws/SequenceFetcherTest.java @@ -55,7 +55,8 @@ public class SequenceFetcherTest Map> seen = new HashMap<>(); jalview.ws.SequenceFetcher sfetcher = new jalview.ws.SequenceFetcher(); String dupes = ""; - for (String src : sfetcher.getOrderedSupportedSources()) + // for (String src : sfetcher.getOrderedSupportedSources()) + for (String src : sfetcher.getNonAlignmentSources()) { List seenitem = seen.get(src); if (seenitem != null) @@ -77,6 +78,7 @@ public class SequenceFetcherTest * simple run method to test dbsources. * * @param argv + * @j2sIgnore */ public static void main(String[] argv) { @@ -174,23 +176,24 @@ public class SequenceFetcherTest System.out.println("Type: " + source); SequenceI[] prod = crossRef.findXrefSequences(source, dna) .getSequencesArray(); - System.out.println("Found " - + ((prod == null) ? "no" : "" + prod.length) - + " products"); + System.out.println( + "Found " + ((prod == null) ? "no" : "" + prod.length) + + " products"); if (prod != null) { for (int p = 0; p < prod.length; p++) { - System.out.println("Prod " + p + ": " - + prod[p].getDisplayId(true)); + System.out.println( + "Prod " + p + ": " + prod[p].getDisplayId(true)); } } } } else { - noProds.addElement((dna ? new Object[] { al, al } - : new Object[] { al })); + noProds.addElement( + (dna ? new Object[] + { al, al } : new Object[] { al })); } } @@ -264,8 +267,8 @@ public class SequenceFetcherTest // present) for (int p = 0; p < prod.length; p++) { - System.out.println("Prod " + p + ": " - + prod[p].getDisplayId(true)); + System.out.println( + "Prod " + p + ": " + prod[p].getDisplayId(true)); } } }