X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fws%2Fdbsources%2FRemoteFormatTest.java;h=629bd8aacaafbf5c36f09c39cf1fbad803ea379d;hb=2d28597b643c287eee1f495e56c3529be05bbc5d;hp=90d4472246f64bd27e65346ae9cfa2d5336cf455;hpb=7451c6419c9c94627f79d044228db55b90e9b4cf;p=jalview.git diff --git a/test/jalview/ws/dbsources/RemoteFormatTest.java b/test/jalview/ws/dbsources/RemoteFormatTest.java index 90d4472..629bd8a 100644 --- a/test/jalview/ws/dbsources/RemoteFormatTest.java +++ b/test/jalview/ws/dbsources/RemoteFormatTest.java @@ -51,7 +51,7 @@ public class RemoteFormatTest Cache.applicationProperties.setProperty("ADD_SS_ANN", Boolean.TRUE.toString()); - sf = new SequenceFetcher(false); + sf = new SequenceFetcher(); } @DataProvider(name = "AccessionData") @@ -80,7 +80,7 @@ public class RemoteFormatTest SequenceI sq = al.getSequenceAt(0); // suppress this check as only Uniprot and PDB acquire PDB refs // assertTrue(sq.getAllPDBEntries().size() > 0, "No PDBEntry on sequence."); - assertTrue(sq.getDBRefs().length > 0, "No DBRef on sequence."); + assertTrue(sq.getDBRefs().size() > 0, "No DBRef on sequence."); // suppress this test as only certain databases provide 'primary' dbrefs // assertFalse(sq.getPrimaryDBRefs().isEmpty()); int length = AlignSeq.extractGaps("-. ", sq.getSequenceAsString()) @@ -92,7 +92,7 @@ public class RemoteFormatTest @Test(groups = { "Network" }) public void testUniprotFreeTextSearch() throws Exception { - List wantedFields = new ArrayList(); + List wantedFields = new ArrayList<>(); FTSRestClientI client = UniProtFTSRestClient.getInstance(); wantedFields.add(client.getDataColumnByNameOrCode("id")); wantedFields.add(client.getDataColumnByNameOrCode("entry name"));