X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fws%2Fdbsources%2FUniprotTest.java;h=2df8be69fb71d97168519ec0a04cb68661d9c8ab;hb=37de9310bec3501cbc6381e0c3dcb282fcaad812;hp=77f8078981a010046c0572db1ea1de88ba0f3a37;hpb=7b371f1422157268c4dc89ce0766916eecf9779e;p=jalview.git diff --git a/test/jalview/ws/dbsources/UniprotTest.java b/test/jalview/ws/dbsources/UniprotTest.java index 77f8078..2df8be6 100644 --- a/test/jalview/ws/dbsources/UniprotTest.java +++ b/test/jalview/ws/dbsources/UniprotTest.java @@ -21,6 +21,7 @@ package jalview.ws.dbsources; import static org.testng.AssertJUnit.assertEquals; +import static org.testng.AssertJUnit.assertFalse; import static org.testng.AssertJUnit.assertNotNull; import static org.testng.AssertJUnit.assertNull; @@ -117,25 +118,21 @@ public class UniprotTest PDBEntry xref = xrefs.get(0); assertEquals("2FSQ", xref.getId()); assertEquals("PDB", xref.getType()); - assertEquals(2, xref.getProperty().size()); - assertEquals("X-ray", xref.getProperty().get("method")); - assertEquals("1.40", xref.getProperty().get("resolution")); + assertEquals("X-ray", xref.getProperty("method")); + assertEquals("1.40", xref.getProperty("resolution")); xref = xrefs.get(1); assertEquals("2FSR", xref.getId()); assertEquals("PDBsum", xref.getType()); - assertNull(xref.getProperty()); + assertFalse(xref.getProperties().hasMoreElements()); xref = xrefs.get(2); assertEquals("AE007869", xref.getId()); assertEquals("EMBL", xref.getType()); - assertNotNull(xref.getProperty()); assertEquals("AAK85932.1", - (String) xref.getProperty().get("protein sequence ID")); + xref.getProperty("protein sequence ID")); assertEquals("Genomic_DNA", - (String) xref.getProperty().get("molecule type")); - assertEquals(2, xref.getProperty().size()); - + xref.getProperty("molecule type")); } @Test(groups = { "Functional" }) @@ -148,6 +145,7 @@ public class UniprotTest assertEquals(6, seq.getDBRefs().length); // 2*Uniprot, PDB, PDBsum, 2*EMBL } + /** * Test the method that formats the sequence id */ @@ -173,7 +171,7 @@ public class UniprotTest { UniprotEntry entry = new Uniprot().getUniprotEntries( new StringReader(UNIPROT_XML)).get(0); - + /* * recommended names concatenated with space separator */