X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fws%2Fjabaws%2FDisorderAnnotExportImport.java;h=e561479beec1700ad8f2a11292e753ceb3296d54;hb=43c78e88653d6b6d14920abf9fa23733ece55c1f;hp=6076dec6f6bd102f1c5d1b21f22f8086a6dd7c73;hpb=7765b0564ec6d6fcd802800539fc42d9a7460192;p=jalview.git

diff --git a/test/jalview/ws/jabaws/DisorderAnnotExportImport.java b/test/jalview/ws/jabaws/DisorderAnnotExportImport.java
index 6076dec..e561479 100644
--- a/test/jalview/ws/jabaws/DisorderAnnotExportImport.java
+++ b/test/jalview/ws/jabaws/DisorderAnnotExportImport.java
@@ -151,7 +151,7 @@ public class DisorderAnnotExportImport
                       FormatAdapter.PASTE));
 
       // test for consistency in io
-      StockholmFileTest.testAlignmentEquivalence(al, al_new);
+      StockholmFileTest.testAlignmentEquivalence(al, al_new, true);
       return;
     } catch (Exception e)
     {