X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fws%2Fjabaws%2FJpredJabaStructExportImport.java;h=d5b6ed118f621d6324ee3e7e7948f72cd0bf2b08;hb=b293e4fedbfac29547a9af2b46028ac85a7376c1;hp=b8fe0a32b087f9fa8a4b795380a97b5268d65401;hpb=483e7163b1fb8d4bcb9393014816c944befce328;p=jalview.git

diff --git a/test/jalview/ws/jabaws/JpredJabaStructExportImport.java b/test/jalview/ws/jabaws/JpredJabaStructExportImport.java
index b8fe0a3..d5b6ed1 100644
--- a/test/jalview/ws/jabaws/JpredJabaStructExportImport.java
+++ b/test/jalview/ws/jabaws/JpredJabaStructExportImport.java
@@ -188,7 +188,7 @@ public class JpredJabaStructExportImport
     try
     {
       // what format would be appropriate for RNAalifold annotations?
-      String aligfileout = FileFormat.Pfam.getAlignmentFile().print(
+      String aligfileout = FileFormat.Pfam.getWriter(null).print(
               al.getSequencesArray(), true);
 
       String anfileout = new AnnotationFile()