X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fws%2Fjabaws%2FJpredJabaStructExportImport.java;h=e347e5531b00ed174a295a394c32cc2824932593;hb=fddf3084802b37e5cee17829e32692a4aac3e60d;hp=0b1716921e2bed34de1be37a5ff40e3a0938cbb9;hpb=3412b273e964fb1a9d22564b04a5f0c827ec2461;p=jalview.git

diff --git a/test/jalview/ws/jabaws/JpredJabaStructExportImport.java b/test/jalview/ws/jabaws/JpredJabaStructExportImport.java
index 0b17169..e347e55 100644
--- a/test/jalview/ws/jabaws/JpredJabaStructExportImport.java
+++ b/test/jalview/ws/jabaws/JpredJabaStructExportImport.java
@@ -23,6 +23,18 @@ package jalview.ws.jabaws;
 import static org.testng.AssertJUnit.assertNotNull;
 import static org.testng.AssertJUnit.assertTrue;
 
+import jalview.datamodel.AlignmentI;
+import jalview.gui.Jalview2XML;
+import jalview.io.AnnotationFile;
+import jalview.io.FormatAdapter;
+import jalview.io.StockholmFileTest;
+import jalview.ws.jws2.JPred301Client;
+import jalview.ws.jws2.JabaParamStore;
+import jalview.ws.jws2.Jws2Discoverer;
+import jalview.ws.jws2.SequenceAnnotationWSClient;
+import jalview.ws.jws2.jabaws2.Jws2Instance;
+import jalview.ws.params.AutoCalcSetting;
+
 import java.awt.Component;
 import java.util.ArrayList;
 import java.util.List;
@@ -38,18 +50,6 @@ import org.testng.annotations.Test;
 import compbio.metadata.Argument;
 import compbio.metadata.WrongParameterException;
 
-import jalview.datamodel.AlignmentI;
-import jalview.gui.Jalview2XML;
-import jalview.io.AnnotationFile;
-import jalview.io.FormatAdapter;
-import jalview.io.StockholmFileTest;
-import jalview.ws.jws2.JPred301Client;
-import jalview.ws.jws2.JabaParamStore;
-import jalview.ws.jws2.Jws2Discoverer;
-import jalview.ws.jws2.SequenceAnnotationWSClient;
-import jalview.ws.jws2.jabaws2.Jws2Instance;
-import jalview.ws.params.AutoCalcSetting;
-
 public class JpredJabaStructExportImport
 {
   public static String testseqs = "examples/uniref50.fa";
@@ -71,7 +71,6 @@ public class JpredJabaStructExportImport
 
     for (Jws2Instance svc : disc.getServices())
     {
-
       if (svc.getServiceTypeURI().toLowerCase().contains("jpred"))
       {
         jpredws = svc;
@@ -79,18 +78,10 @@ public class JpredJabaStructExportImport
     }
 
     System.out.println("State of jpredws: " + jpredws);
-
-    if (jpredws == null)
-    {
-      Assert.fail("jpredws is null");
-    }
-
+    Assert.assertNotNull(jpredws, "jpredws is null!");
     jalview.io.FileLoader fl = new jalview.io.FileLoader(false);
-
     af = fl.LoadFileWaitTillLoaded(testseqs, jalview.io.FormatAdapter.FILE);
-
     assertNotNull("Couldn't load test data ('" + testseqs + "')", af);
-
   }
 
   @AfterClass
@@ -103,7 +94,7 @@ public class JpredJabaStructExportImport
     }
   }
 
-  @Test
+  @Test(groups ={ "Functional" })
   public void testJPredStructOneSeqOnly()
   {
     af.selectAllSequenceMenuItem_actionPerformed(null);
@@ -155,7 +146,7 @@ public class JpredJabaStructExportImport
 
   }
 
-  @Test
+  @Test(groups ={ "Functional" })
   public void testJPredStructExport()
   {
 
@@ -226,7 +217,7 @@ public class JpredJabaStructExportImport
             + "\nCouldn't complete Annotation file roundtrip input/output/input test.");
   }
 
-  @Test
+  @Test(groups ={ "Functional" })
   public void testJpredwsSettingsRecovery()
   {
     Assert.fail("not implemnented");