X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fws%2Fjabaws%2FMinJabawsClientTests.java;h=fe92b5ae1e7d2a273945800954590286f2d2aa1a;hb=52288466dd1e71946a06fd1e6ea15fa8e652c693;hp=61f82031f62d21f6223d02be348f6b6ce518205c;hpb=4d7f98a6dd54d9863ba449ec79dcd95d25ed863d;p=jalview.git

diff --git a/test/jalview/ws/jabaws/MinJabawsClientTests.java b/test/jalview/ws/jabaws/MinJabawsClientTests.java
index 61f8203..fe92b5a 100644
--- a/test/jalview/ws/jabaws/MinJabawsClientTests.java
+++ b/test/jalview/ws/jabaws/MinJabawsClientTests.java
@@ -18,40 +18,47 @@ import compbio.ws.client.Services;
 public class MinJabawsClientTests
 {
 
-	/**
-	 * simple test for the benefit of JAL-1338
-	 * @throws Exception
-	 */
-	@SuppressWarnings("rawtypes")
-  @Test(groups =
-  { "Network" })
-	public void msaTest() throws Exception {
-		String url;
-		RegistryWS registry = Jws2Client
-				.connectToRegistry(url = "http://www.compbio.dundee.ac.uk/jabaws");
-		if (registry != null) {
+  /**
+   * simple test for the benefit of JAL-1338
+   * 
+   * @throws Exception
+   */
+  @SuppressWarnings("rawtypes")
+  @Test(groups = { "Network" })
+  public void msaTest() throws Exception
+  {
+    String url;
+    RegistryWS registry = Jws2Client
+            .connectToRegistry(url = "http://www.compbio.dundee.ac.uk/jabaws");
+    if (registry != null)
+    {
 
-			MsaWS msaservice = null;
-			for (Services service : registry.getSupportedServices()) {
-				if (service.equals(Services.ClustalOWS)) {
-					msaservice = (MsaWS) Jws2Client.connect(url, service);
-					if (msaservice != null) {
-						break;
-					}
-				}
-			}
-			if (msaservice == null) {
-				Assert.fail("couldn't find a clustalO service on the public registry");
-			}
-			FastaSequence fsq = new FastaSequence("seqA",
-					"SESESESESESESESSESESSESESESESESESESESESEEEEEESSESESESESSSSESESESESESESE");
-			List<FastaSequence> iseqs = new ArrayList<FastaSequence>();
-			for (int i = 0; i < 9; i++) {
-				iseqs.add(new FastaSequence(fsq.getId() + i, fsq.getSequence()
-						+ fsq.getSequence().substring(i + 3, i + 3 + i)));
-			}
+      MsaWS msaservice = null;
+      for (Services service : registry.getSupportedServices())
+      {
+        if (service.equals(Services.ClustalOWS))
+        {
+          msaservice = (MsaWS) Jws2Client.connect(url, service);
+          if (msaservice != null)
+          {
+            break;
+          }
+        }
+      }
+      if (msaservice == null)
+      {
+        Assert.fail("couldn't find a clustalO service on the public registry");
+      }
+      FastaSequence fsq = new FastaSequence("seqA",
+              "SESESESESESESESSESESSESESESESESESESESESEEEEEESSESESESESSSSESESESESESESE");
+      List<FastaSequence> iseqs = new ArrayList<FastaSequence>();
+      for (int i = 0; i < 9; i++)
+      {
+        iseqs.add(new FastaSequence(fsq.getId() + i, fsq.getSequence()
+                + fsq.getSequence().substring(i + 3, i + 3 + i)));
+      }
 
-			String jobid = msaservice.align(iseqs);
+      String jobid = msaservice.align(iseqs);
       if (jobid != null)
       {
         JobStatus js = null;
@@ -86,8 +93,8 @@ public class MinJabawsClientTests
         // System.out.println(t.getFormattedFasta());
         // }
         // });
-			}
+      }
 
-		}
-	}
+    }
+  }
 }