X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fws%2Fjabaws%2FRNAStructExportImport.java;fp=test%2Fjalview%2Fws%2Fjabaws%2FRNAStructExportImport.java;h=f1430f673a50f64c60d830051928aee94ba94e97;hb=95ebbef7b78bf266a8252bd479510be3c80cd234;hp=06c803f8396fb83aac2218d83fa76ede11c94006;hpb=3a83e3b795ee674956d0ce18b9a89a825f7b5a8e;p=jalview.git diff --git a/test/jalview/ws/jabaws/RNAStructExportImport.java b/test/jalview/ws/jabaws/RNAStructExportImport.java index 06c803f..f1430f6 100644 --- a/test/jalview/ws/jabaws/RNAStructExportImport.java +++ b/test/jalview/ws/jabaws/RNAStructExportImport.java @@ -201,7 +201,7 @@ public class RNAStructExportImport try { // what format would be appropriate for RNAalifold annotations? - String aligfileout = FileFormat.Pfam.getAlignmentFile().print( + String aligfileout = FileFormat.Pfam.getWriter(null).print( al.getSequencesArray(), true); String anfileout = new AnnotationFile()