X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fws%2Fjabaws%2FRNAStructExportImport.java;h=420b525e5bbb693b6c8ab29441ef9830cded58f9;hb=141040cac1e8570634a25ad6a5550a56558041fb;hp=1475b4e4dd6cdc5a59118719d1515bcffbaeef55;hpb=fe9cea784bed23e4fe5507714bf945b4ca67c077;p=jalview.git

diff --git a/test/jalview/ws/jabaws/RNAStructExportImport.java b/test/jalview/ws/jabaws/RNAStructExportImport.java
index 1475b4e..420b525 100644
--- a/test/jalview/ws/jabaws/RNAStructExportImport.java
+++ b/test/jalview/ws/jabaws/RNAStructExportImport.java
@@ -20,9 +20,9 @@
  */
 package jalview.ws.jabaws;
 
-import static org.junit.Assert.assertNotNull;
-import static org.junit.Assert.assertTrue;
-import static org.junit.Assert.fail;
+import static org.testng.AssertJUnit.assertNotNull;
+import static org.testng.AssertJUnit.assertTrue;
+
 import jalview.datamodel.AlignmentAnnotation;
 import jalview.datamodel.AlignmentI;
 import jalview.gui.Jalview2XML;
@@ -42,13 +42,14 @@ import java.util.List;
 import javax.swing.JMenu;
 import javax.swing.JMenuItem;
 
-import org.junit.AfterClass;
-import org.junit.Assert;
-import org.junit.BeforeClass;
-import org.junit.Test;
+import org.testng.Assert;
+import org.testng.annotations.AfterClass;
+import org.testng.annotations.BeforeClass;
+import org.testng.annotations.Test;
 
 import compbio.metadata.WrongParameterException;
 
+
 public class RNAStructExportImport
 {
   public static String testseqs = "examples/RF00031_folded.stk";
@@ -61,7 +62,7 @@ public class RNAStructExportImport
 
   public static jalview.gui.AlignFrame af = null;
 
-  @BeforeClass
+  @BeforeClass(alwaysRun = true)
   public static void setUpBeforeClass() throws Exception
   {
 
@@ -81,7 +82,7 @@ public class RNAStructExportImport
 
     if (rnaalifoldws == null)
     {
-      fail("no web service");
+      Assert.fail("no web service");
     }
 
     jalview.io.FileLoader fl = new jalview.io.FileLoader(false);
@@ -118,7 +119,7 @@ public class RNAStructExportImport
     }
   }
 
-  @Test
+  @Test(groups = { "Functional" })
   public void testRNAAliFoldValidStructure()
   {
 
@@ -138,19 +139,21 @@ public class RNAStructExportImport
     } while (af.getViewport().getCalcManager().isWorking());
 
     AlignmentI orig_alig = af.getViewport().getAlignment();
-    for (AlignmentAnnotation aa:orig_alig.getAlignmentAnnotation())
+    for (AlignmentAnnotation aa : orig_alig.getAlignmentAnnotation())
     {
       if (alifoldClient.involves(aa))
       {
         if (aa.isRNA())
         {
-          Assert.assertTrue("Did not create valid structure from RNAALiFold prediction", aa.isValidStruc());
+          assertTrue(
+                  "Did not create valid structure from RNAALiFold prediction",
+                  aa.isValidStruc());
         }
       }
     }
   }
 
-  @Test
+  @Test(groups = { "Functional" })
   public void testRNAStructExport()
   {
 
@@ -216,12 +219,12 @@ public class RNAStructExportImport
     {
       e.printStackTrace();
     }
-    fail("Test "
+    Assert.fail("Test "
             + testname
             + "\nCouldn't complete Annotation file roundtrip input/output/input test.");
   }
 
-  @Test
+  @Test(groups = { "Functional" })
   public void testRnaalifoldSettingsRecovery()
   {
     List<compbio.metadata.Argument> opts = new ArrayList<compbio.metadata.Argument>();
@@ -235,7 +238,7 @@ public class RNAStructExportImport
           rg.setValue("292");
         } catch (WrongParameterException q)
         {
-          fail("Couldn't set the temperature parameter "
+          Assert.fail("Couldn't set the temperature parameter "
                   + q.getStackTrace());
         }
         opts.add(rg);