X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fws%2Frest%2FShmmrRSBSService.java;h=a9668a9df1a80964733366785f677bf9e727ad14;hb=cb8e52fbbc5f725e3f7f48c672cdddb0690bd978;hp=1f807b3d2c7042ad09abd1954a92b3cd8ce47d8c;hpb=fddf3084802b37e5cee17829e32692a4aac3e60d;p=jalview.git

diff --git a/test/jalview/ws/rest/ShmmrRSBSService.java b/test/jalview/ws/rest/ShmmrRSBSService.java
index 1f807b3..a9668a9 100644
--- a/test/jalview/ws/rest/ShmmrRSBSService.java
+++ b/test/jalview/ws/rest/ShmmrRSBSService.java
@@ -24,9 +24,11 @@ import static org.testng.AssertJUnit.assertNotNull;
 import static org.testng.AssertJUnit.assertTrue;
 
 import jalview.gui.AlignFrame;
+import jalview.gui.JvOptionPane;
 
 import java.util.Map;
 
+import org.testng.annotations.BeforeClass;
 import org.testng.annotations.Test;
 
 /**
@@ -36,7 +38,14 @@ import org.testng.annotations.Test;
 public class ShmmrRSBSService
 {
 
-  @Test(groups ={ "Functional" })
+  @BeforeClass(alwaysRun = true)
+  public void setUpJvOptionPane()
+  {
+    JvOptionPane.setInteractiveMode(false);
+    JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
+  }
+
+  @Test(groups = { "Functional" })
   public void testShmmrService()
   {
 
@@ -46,17 +55,17 @@ public class ShmmrRSBSService
                     RestClient.makeShmmrRestClient().service));
   }
 
-  @Test(groups ={ "Functional" })
+  @Test(groups = { "Functional" })
   public void testShmmrServiceDataprep() throws Exception
   {
     RestClient _rc = RestClient.makeShmmrRestClient();
     assertNotNull(_rc);
     AlignFrame alf = new jalview.io.FileLoader(false)
             .LoadFileWaitTillLoaded("examples/testdata/smad.fa",
-                    jalview.io.FormatAdapter.FILE);
+                    jalview.io.DataSourceType.FILE);
     assertNotNull("Couldn't find test data.", alf);
     alf.loadJalviewDataFile("examples/testdata/smad_groups.jva",
-            jalview.io.FormatAdapter.FILE, null, null);
+            jalview.io.DataSourceType.FILE, null, null);
     assertTrue(
             "Couldn't load the test data's annotation file (should be 5 groups but found "
                     + alf.getViewport().getAlignment().getGroups().size()
@@ -66,7 +75,7 @@ public class ShmmrRSBSService
     RestClient rc = new RestClient(_rc.service, alf, true);
 
     assertNotNull("Couldn't creat RestClient job.", rc);
-    jalview.bin.Cache.initLogger();
+    jalview.bin.Console.initLogger();
     RestJob rjb = new RestJob(0, new RestJobThread(rc),
             rc.av.getAlignment(), null);
     rjb.setAlignmentForInputs(rc.service.getInputParams().values(),