X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fws%2Fseqfetcher%2FDbRefFetcherTest.java;h=de91af3eb3ad26733874801998bc7ed26de642d1;hb=4660767b43e249085765847c67da1307ccff9168;hp=0a565bda2ef3c92c62d67b0587ddd6bf9a88c5cd;hpb=37de9310bec3501cbc6381e0c3dcb282fcaad812;p=jalview.git

diff --git a/test/jalview/ws/seqfetcher/DbRefFetcherTest.java b/test/jalview/ws/seqfetcher/DbRefFetcherTest.java
index 0a565bd..de91af3 100644
--- a/test/jalview/ws/seqfetcher/DbRefFetcherTest.java
+++ b/test/jalview/ws/seqfetcher/DbRefFetcherTest.java
@@ -21,6 +21,7 @@
 package jalview.ws.seqfetcher;
 
 import static org.testng.AssertJUnit.assertEquals;
+import static org.testng.AssertJUnit.assertFalse;
 import static org.testng.AssertJUnit.assertNotNull;
 import static org.testng.AssertJUnit.assertTrue;
 
@@ -31,6 +32,7 @@ import jalview.datamodel.DBRefSource;
 import jalview.datamodel.FeatureProperties;
 import jalview.datamodel.SequenceFeature;
 import jalview.datamodel.SequenceI;
+import jalview.gui.JvOptionPane;
 import jalview.util.DBRefUtils;
 import jalview.ws.SequenceFetcher;
 import jalview.ws.dbsources.Pdb;
@@ -51,6 +53,13 @@ import org.testng.annotations.Test;
 public class DbRefFetcherTest
 {
 
+  @BeforeClass(alwaysRun = true)
+  public void setUpJvOptionPane()
+  {
+    JvOptionPane.setInteractiveMode(false);
+    JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
+  }
+
   /**
    * @throws java.lang.Exception
    */
@@ -165,13 +174,13 @@ public class DbRefFetcherTest
     SequenceI seq = alsq.getSequenceAt(0);
     assertEquals("Wrong sequence name", embl.getDbSource() + "|"
             + retrievalId, seq.getName());
-    SequenceFeature[] sfs = seq.getSequenceFeatures();
-    assertNotNull("Sequence features missing", sfs);
+    List<SequenceFeature> sfs = seq.getSequenceFeatures();
+    assertFalse("Sequence features missing", sfs.isEmpty());
     assertTrue(
             "Feature not CDS",
             FeatureProperties.isCodingFeature(embl.getDbSource(),
-                    sfs[0].getType()));
-    assertEquals(embl.getDbSource(), sfs[0].getFeatureGroup());
+ sfs.get(0).getType()));
+    assertEquals(embl.getDbSource(), sfs.get(0).getFeatureGroup());
     DBRefEntry[] dr = DBRefUtils.selectRefs(seq.getDBRefs(),
             new String[] { DBRefSource.UNIPROT });
     assertNotNull(dr);