X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fws%2Fsifts%2FSiftsClientTest.java;fp=test%2Fjalview%2Fws%2Fsifts%2FSiftsClientTest.java;h=d5b2e0b916ed7fdbe5c4cc0e6e01ba2858a01837;hb=eb3e681d6e82ccdd5d312d1981dfb306e7f479f0;hp=0f5bd4da4fb0a3aafffbbd9376cb26241d6d5de1;hpb=cb31e23d9138e481479623374aed7767bf8934d2;p=jalview.git diff --git a/test/jalview/ws/sifts/SiftsClientTest.java b/test/jalview/ws/sifts/SiftsClientTest.java index 0f5bd4d..d5b2e0b 100644 --- a/test/jalview/ws/sifts/SiftsClientTest.java +++ b/test/jalview/ws/sifts/SiftsClientTest.java @@ -195,10 +195,11 @@ public class SiftsClientTest SiftsSettings.setCacheThresholdInDays("2"); SiftsSettings.setFailSafePIDThreshold("70"); PDBfile pdbFile; - + pdbFile = new PDBfile(false, false, false, "test/jalview/io/" + testPDBId + ".pdb", DataSourceType.FILE); - // TODO: this uses a network connection - we should mock the sifts testPDBId.xml.gz + // TODO: this uses a network connection - we should mock the sifts + // testPDBId.xml.gz siftsClient = new SiftsClient(pdbFile); } @@ -207,11 +208,13 @@ public class SiftsClientTest { siftsClient = null; } - - @Test(groups= {"Functional"}) - public void testSIFTsDownloadURL() { + + @Test(groups = { "Functional" }) + public void testSIFTsDownloadURL() + { String expectedUrl = "https://ftp.ebi.ac.uk/pub/databases/msd/sifts/split_xml/xy/1xyz.sifts.xml.gz"; - Assert.assertEquals(SiftsClient.getDownloadUrlFor("1xyz.sifts.xml.gz"), expectedUrl); + Assert.assertEquals(SiftsClient.getDownloadUrlFor("1xyz.sifts.xml.gz"), + expectedUrl); } @Test(groups = { "Network" }) @@ -376,7 +379,8 @@ public class SiftsClientTest { SequenceI invalidTestSeq = new Sequence("testSeq", "ABCDEFGH"); DBRefEntry invalidDBRef = new DBRefEntry(); - invalidDBRef.setAccessionId("BLAR"); // note no version is set, so also invalid + invalidDBRef.setAccessionId("BLAR"); // note no version is set, so also + // invalid invalidTestSeq.addDBRef(invalidDBRef); siftsClient.getValidSourceDBRef(invalidTestSeq); }