X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fws%2Fsifts%2FSiftsClientTest.java;h=d3b485e867292fd684304d9f12e590a2bac25f0e;hb=4bdfd889545ff56e3b697f7b59b0c5320cf6028f;hp=6f692dc134d202cd90ae3ef9468d9023df39c554;hpb=37bc56d23032f26c0da11b0532902d1f629a2080;p=jalview.git

diff --git a/test/jalview/ws/sifts/SiftsClientTest.java b/test/jalview/ws/sifts/SiftsClientTest.java
index 6f692dc..d3b485e 100644
--- a/test/jalview/ws/sifts/SiftsClientTest.java
+++ b/test/jalview/ws/sifts/SiftsClientTest.java
@@ -21,12 +21,14 @@
 package jalview.ws.sifts;
 
 import jalview.api.DBRefEntryI;
+import jalview.bin.Cache;
 import jalview.datamodel.DBRefEntry;
 import jalview.datamodel.DBRefSource;
 import jalview.datamodel.Sequence;
 import jalview.datamodel.SequenceI;
 import jalview.io.AppletFormatAdapter;
 import jalview.structure.StructureMapping;
+import jalview.xml.binding.sifts.Entry.Entity;
 
 import java.io.File;
 import java.io.IOException;
@@ -169,6 +171,8 @@ public class SiftsClientTest
   @BeforeTest(alwaysRun = true)
   public void setUpSiftsClient() throws SiftsException
   {
+    // read test props before manipulating config
+    Cache.loadProperties("test/jalview/io/testProps.jvprops");
     // SIFTs entries are updated weekly - so use saved SIFTs file to enforce
     // test reproducibility
     new SiftsSettings();
@@ -250,8 +254,6 @@ public class SiftsClientTest
 
     // TODO delete when auto-fetching of DBRefEntry is implemented
     DBRefEntry dbRef = new DBRefEntry("uniprot", "", "P00221");
-    dbRef.setStartRes(1);
-    dbRef.setEndRes(147);
     testSeq.addDBRef(dbRef);
     // testSeq.setSourceDBRef(dbRef);
 
@@ -305,7 +307,6 @@ public class SiftsClientTest
           throws IllegalArgumentException, SiftsException
   {
       siftsClient.populateAtomPositions(null, null);
-
   }
 
   @Test(
@@ -327,8 +328,6 @@ public class SiftsClientTest
       DBRefEntryI expectedDBRef = new DBRefEntry();
       expectedDBRef.setSource(DBRefSource.UNIPROT);
       expectedDBRef.setAccessionId("P00221");
-      expectedDBRef.setStartRes(1);
-      expectedDBRef.setEndRes(147);
       expectedDBRef.setVersion("");
       Assert.assertEquals(actualValidSrcDBRef, expectedDBRef);
     } catch (Exception e)
@@ -376,8 +375,6 @@ public class SiftsClientTest
     DBRefEntryI validDBRef = new DBRefEntry();
     validDBRef.setSource(DBRefSource.UNIPROT);
     validDBRef.setAccessionId("P00221");
-    validDBRef.setStartRes(1);
-    validDBRef.setEndRes(147);
     validDBRef.setVersion("");
     Assert.assertTrue(siftsClient.isValidDBRefEntry(validDBRef));
   }
@@ -452,4 +449,29 @@ public class SiftsClientTest
     System.out.println("Actual DbVersion: " + actualDbVersion);
     Assert.assertEquals(actualDbVersion, "2.0");
   }
+
+  @Test(groups = { "Functional" })
+  public void getEntityByMostOptimalMatchedIdTest()
+  {
+    SiftsClient siftsClientX = null;
+    PDBfile pdbFile;
+    try
+    {
+      pdbFile = new PDBfile(false, false, false, "test/jalview/io/2nq2"
+              + ".pdb", AppletFormatAdapter.FILE);
+      siftsClientX = new SiftsClient(pdbFile);
+    } catch (Exception e)
+    {
+      e.printStackTrace();
+    }
+    Entity entityA = siftsClientX.getEntityByMostOptimalMatchedId("A");
+    Assert.assertEquals(entityA.getEntityId(), "A");
+    Entity entityB = siftsClientX.getEntityByMostOptimalMatchedId("B");
+    Assert.assertEquals(entityB.getEntityId(), "C");
+    Entity entityC = siftsClientX.getEntityByMostOptimalMatchedId("C");
+    Assert.assertEquals(entityC.getEntityId(), "B");
+    Entity entityD = siftsClientX.getEntityByMostOptimalMatchedId("D");
+    Assert.assertEquals(entityD.getEntityId(), "D");
+
+  }
 }