X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fws2%2Factions%2Fannotation%2FAnnotationJobTest.java;h=183d6f34b9e2c4cb567a0117f5e8c6400a3fcae9;hb=5a48101c1958df5d0f655a7044afd506df4e040f;hp=4e3767fad13def7a235539c1c79e28ccea2ce660;hpb=54844a3baecd8bd04d948897180e2bfc1a293e91;p=jalview.git

diff --git a/test/jalview/ws2/actions/annotation/AnnotationJobTest.java b/test/jalview/ws2/actions/annotation/AnnotationJobTest.java
index 4e3767f..183d6f3 100644
--- a/test/jalview/ws2/actions/annotation/AnnotationJobTest.java
+++ b/test/jalview/ws2/actions/annotation/AnnotationJobTest.java
@@ -172,7 +172,7 @@ public class AnnotationJobTest
   }
 
   @Test(groups = { "Functional"} )
-  public void testCreate_ContainsNonStandardAndNoFilterNonStandard_NonStandardToGap()
+  public void testCreate_ContainsNonStandardAndNoFilterNonStandard_NonStandardRemain()
   {
     var alignment = new Alignment(new Sequence[] {
         new Sequence("test1", "ACACAOACACAC"),
@@ -180,6 +180,20 @@ public class AnnotationJobTest
     });
     var annotJob = AnnotationJob.create(alignment, true, true, true, false, 0);
     assertThat(annotJob.getInputSequences(), contains(
+            matchesSequenceString("ACACAOACACAC"),
+            matchesSequenceString("ABAVAVAVABAV")
+    ));
+  }
+
+  @Test(groups = { "Functional"} )
+  public void testCreate_ContainsNonStandardAndFilterNonStandard_NonStandardToGap()
+  {
+    var alignment = new Alignment(new Sequence[] {
+        new Sequence("test1", "ACACAOACACAC"),
+        new Sequence("test2", "ABAVAVAVABAV")
+    });
+    var annotJob = AnnotationJob.create(alignment, true, true, true, true, 0);
+    assertThat(annotJob.getInputSequences(), contains(
             matchesSequenceString("ACACA-ACACAC"),
             matchesSequenceString("A-AVAVAVA-AV")
     ));