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diff --git a/testsrc/compbio/casscode/structure/RNAalifoldTester.java b/testsrc/compbio/casscode/structure/RNAalifoldTester.java
new file mode 100644
index 0000000..370d040
--- /dev/null
+++ b/testsrc/compbio/casscode/structure/RNAalifoldTester.java
@@ -0,0 +1,119 @@
+package compbio.runner.structure;
+
+
+import static org.testng.Assert.assertEquals;
+import static org.testng.Assert.assertFalse;
+import static org.testng.Assert.assertNotNull;
+import static org.testng.Assert.assertNull;
+import static org.testng.Assert.assertTrue;
+import static org.testng.Assert.fail;
+
+import java.io.File;
+import java.io.FileInputStream;
+import java.io.FileNotFoundException;
+import java.io.IOException;
+import java.text.ParseException;
+
+import javax.xml.bind.ValidationException;
+
+import org.apache.log4j.*;
+import org.ggf.drmaa.DrmaaException;
+import org.ggf.drmaa.JobInfo;
+import org.testng.annotations.BeforeMethod;
+import org.testng.annotations.Test;
+
+import compbio.data.sequence.RNAStructScoreManager;
+import compbio.data.sequence.Score;
+import compbio.data.sequence.ScoreManager;
+import compbio.data.sequence.ScoreManager.ScoreHolder;
+import compbio.data.sequence.SequenceUtil;
+import compbio.engine.AsyncExecutor;
+import compbio.engine.Configurator;
+import compbio.engine.SyncExecutor;
+import compbio.engine.client.ConfExecutable;
+import compbio.engine.client.ConfiguredExecutable;
+import compbio.engine.client.Executable;
+import compbio.engine.client.RunConfiguration;
+import compbio.engine.cluster.drmaa.ClusterEngineUtil;
+import compbio.engine.cluster.drmaa.ClusterRunner;
+import compbio.engine.cluster.drmaa.StatisticManager;
+import compbio.engine.local.AsyncLocalRunner;
+import compbio.engine.local.LocalExecutorService;
+import compbio.engine.local.LocalRunner;
+import compbio.metadata.AllTestSuit;
+import compbio.metadata.JobExecutionException;
+import compbio.metadata.JobStatus;
+import compbio.metadata.JobSubmissionException;
+import compbio.metadata.LimitsManager;
+import compbio.metadata.PresetManager;
+import compbio.metadata.ResultNotAvailableException;
+import compbio.metadata.RunnerConfig;
+import compbio.runner.msa.ClustalW;
+import compbio.runner.structure.RNAalifold;
+
+public class RNAalifoldTester {
+
+	private static Logger log = Logger
+			.getLogger(AllTestSuit.RUNNER_TEST_LOGGER);
+	
+	
+	private RNAalifold rnaalifold;
+	
+	static final String rnaalifoldConfigFile = AllTestSuit.TEST_DATA_PATH
+			+ "RNAalifoldParameters.xml";
+	public static String test_outfile = "rnaalifold.out";
+	
+	
+	@Test(groups = { AllTestSuit.test_group_runner })
+	public void testRunLocally() {
+		RNAalifold rnaalifold = new RNAalifold();
+		rnaalifold.setInput(AllTestSuit.test_input_aln).setOutput(test_outfile);
+		try{
+			
+			ConfiguredExecutable<RNAalifold> confRNAalifold = Configurator
+					.configureExecutable(rnaalifold, Executable.ExecProvider.Local);
+			LocalRunner lr = new LocalRunner(confRNAalifold);
+			lr.executeJob();
+			confRNAalifold = (ConfiguredExecutable<RNAalifold>) lr.waitForResult();
+			
+			System.out.println("TEST");
+			System.out.println(((RNAStructScoreManager) confRNAalifold.getResults()).toString());
+			
+			assertNotNull(confRNAalifold.getResults()); 
+		} catch (JobSubmissionException e) {
+			e.printStackTrace();
+			fail(e.getLocalizedMessage());
+		} catch (JobExecutionException e) {
+			e.printStackTrace();
+			fail(e.getLocalizedMessage());
+		} catch (ResultNotAvailableException e) {
+			e.printStackTrace();
+			fail(e.getLocalizedMessage());
+		}
+	}
+	
+	
+	public static void main(String[] args) throws JobSubmissionException,
+			JobExecutionException, InterruptedException, ResultNotAvailableException {
+
+		
+		log.warn("Logger test :- Run RNAalifold.main()");
+
+		RNAalifold rnaalifold = new RNAalifold();
+		rnaalifold.setInput(AllTestSuit.test_input_aln).setOutput("test_outfile.txt");
+		
+		ConfiguredExecutable<RNAalifold> confRNAalifold = Configurator
+					.configureExecutable(rnaalifold);
+		AsyncExecutor lr = new AsyncLocalRunner();
+		lr.submitJob(confRNAalifold);
+		
+		
+		System.out.println(((RNAStructScoreManager) confRNAalifold.getResults()).toString());
+
+		
+		Thread.sleep(3000);
+		LocalExecutorService.shutDown();
+		
+	}
+	
+}