X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=testsrc%2Fcompbio%2Fdata%2Fsequence%2FFastaReaderTester.java;h=3a3b74716bec7067c00e46846da7e1833c0f4c44;hb=80667e45ee288ebd40326fd15150a96c467a5de4;hp=77a7fd565312822a34263b318bdf023e26400054;hpb=26166c1ca1dd3761305024cef6ee6ae67c6c135f;p=jabaws.git diff --git a/testsrc/compbio/data/sequence/FastaReaderTester.java b/testsrc/compbio/data/sequence/FastaReaderTester.java index 77a7fd5..3a3b747 100644 --- a/testsrc/compbio/data/sequence/FastaReaderTester.java +++ b/testsrc/compbio/data/sequence/FastaReaderTester.java @@ -34,6 +34,9 @@ public class FastaReaderTester { static FastaSequence s3 = new FastaSequence(" 12 d t y wi k jbke ", " KLSHHDCD" + " N" + " H" + " HSKCTEPHCGNSHQML\n\rHRDP" + " CCDQCQSWEAENWCASMRKAILF"); + static FastaSequence s4 = new FastaSequence(" 12 d t>y wi->foo k jbke ", + " KLSHHDCD" + " N" + " H" + " HSKCTEPHCGNSHQML\n\rHRDP" + + " CCDQCQSWEAENWCASMRKAILF"); @Test() public void test() { @@ -58,7 +61,7 @@ public class FastaReaderTester { } System.out.println("OLD: " + old_seqs); System.out.println("NEW: " + list); - Assert.assertEquals(old_seqs.size() + 1, list.size()); + Assert.assertEquals(old_seqs.size(), list.size()); Assert.assertEquals(old_seqs.get(0), list.get(0)); Assert.assertEquals(old_seqs.get(1), list.get(1)); // Assert.assertEquals(old_seqs.get(2), list.get(2)); @@ -68,6 +71,7 @@ public class FastaReaderTester { Assert.assertEquals(FastaReaderTester.s1, list.get(1)); Assert.assertEquals(FastaReaderTester.s2, list.get(2)); Assert.assertEquals(FastaReaderTester.s3, list.get(3)); + Assert.assertEquals(FastaReaderTester.s4, list.get(4)); } }